Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_G18
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 220 2e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 8e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 86 5e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 62 1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 4e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 59 7e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 29 1.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 220 bits (537), Expect = 2e-58
Identities = 100/119 (84%), Positives = 107/119 (89%)
Frame = -3
Query: 650 AQRLXFQPSFLGMEACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 471
A FQPS LG+E GIHE TYNS+MKCDVDIRKDLY N V+SGGTTMYPGIADRMQKE
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 470 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 294
I ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 317 IQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 33.9 bits (74), Expect = 0.029
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 703 YELPDGQVITIGNXKIPLP 647
YELPDGQVITIGN + P
Sbjct: 240 YELPDGQVITIGNERFRAP 258
Score = 29.1 bits (62), Expect = 0.82
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -2
Query: 735 TXASSXSLEXFTNFPTVRSSPSETXRFRCPEALFPTXVLG 616
T A S SLE P + RFR PEALF LG
Sbjct: 229 TAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (260), Expect = 8e-25
Identities = 48/119 (40%), Positives = 79/119 (66%)
Frame = -3
Query: 650 AQRLXFQPSFLGMEACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 471
A + F P +G EA G+H + S++ D+D+R LY+N VLSGG+T+ G +R E
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 470 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 294
+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 322 LRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -3
Query: 602 GIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 429
G+HE Y S++ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 428 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 321
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 94.7 bits (225), Expect = 1e-20
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 602 GIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 423
GI + N + +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 422 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 297
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 86.2 bits (204), Expect = 5e-18
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 12/117 (10%)
Frame = -3
Query: 635 FQPSFLGMEACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL- 459
FQP +G E G+ E ++++ DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLW 321
Query: 458 -------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 321
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 322 FERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.7 bits (143), Expect = 1e-10
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Frame = -3
Query: 653 VAQRLXFQPSFLGME-ACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 477
+A + F P + + E N V +D+RK LY N VLSGG+T++ +R+Q
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347
Query: 476 KEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 339
+++ + + + +I+ ++ +VW GGS+LA F +K
Sbjct: 348 RDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKA 407
Query: 338 EYDESGPSIVHR 303
+Y+E G SI R
Sbjct: 408 DYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.1 bits (139), Expect = 4e-10
Identities = 27/109 (24%), Positives = 56/109 (51%)
Frame = -3
Query: 635 FQPSFLGMEACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 456
F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T++
Sbjct: 603 FSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIM 662
Query: 455 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 309
P I + W G S + F+ ++++EY E GP +
Sbjct: 663 PVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 59.3 bits (137), Expect = 7e-10
Identities = 35/114 (30%), Positives = 54/114 (47%)
Frame = -3
Query: 641 LXFQPSFLGMEACGIHETTYNSVMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 462
L F PS + + GI E SV +I+ L N V GG +PG R+ E+ +
Sbjct: 286 LLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRS 345
Query: 461 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 300
LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 346 LAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 548 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 378
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 377 SLSTFQQMWISKQEYDESGPSIVHRK 300
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -2
Query: 729 ASSXSLEXFTNFPTVRSSPSETXRFR-CPEALFPTX--VLGYGSLRHPRDHI*LRHEVRR 559
+S+ S N PT + S F C F + + GY +L HPR+ I +R + R
Sbjct: 433 SSTPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYSTLLHPRNPICVRQRIGR 492
Query: 558 G 556
G
Sbjct: 493 G 493
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 401 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -1
Query: 406 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQACNP 227
P SVD S+PPS P S + S P SA+ A Q A G + Q P
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
Query: 226 R 224
+
Sbjct: 106 Q 106
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 366
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,777
Number of Sequences: 5004
Number of extensions: 54690
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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