Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_G16
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.26
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 28 1.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 28 1.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 2.5
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 26 7.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 10.0
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 10.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 679 PXPGRKTSPYPVKYTLXAQCPSMSRA-SSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLT 503
P P K P P ++ PS+S SSVP ++A P P S S + R S+
Sbjct: 1230 PVPTAKAPPVPAP---SSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSK 1286
Query: 502 SPSTGHTQSTS 470
S + H STS
Sbjct: 1287 SKAERHETSTS 1297
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/112 (21%), Positives = 40/112 (35%)
Frame = -1
Query: 751 P*GSMGQXYPXQIPNQXXPRREAXPXPGRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSA 572
P G+ +P P P +S L + S + ++S+P G S
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406
Query: 571 RPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 416
P+ P+ + + + TS S +T + ST L T T + Y
Sbjct: 407 TPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY 458
Score = 30.3 bits (65), Expect = 0.35
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = -1
Query: 679 PXPGRKTSPYP--VKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQL 506
P G T+P V T + + +S GTS+ PL + ++ T P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 505 TSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 416
T+P T TS ST L T T + Y
Sbjct: 406 TTPVTPTVPPTSSSTPLTTTNCTTSTSVPY 435
Score = 29.9 bits (64), Expect = 0.46
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Frame = -1
Query: 751 P*GSMGQXYPXQIPNQXXPRREAXPXPGRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSA 572
P G+ +P P P +S L + S + ++S+P G S
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352
Query: 571 RP----LPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 437
P +PP+ ++S + P + T S+ STS S T P
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = -1
Query: 679 PXPGRKTSPYPVKYT-LXAQCPSMSRASSVPRQGTSARP----LPPSRSTSRTQ*KRPCR 515
P P TS + L S + ++S+P G S P +PP+ ++S + P
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
Query: 514 SQLTSPSTGHTQSTSRSTCLCTLRSP 437
+ T S+ STS S T P
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTSTSIPP 347
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/78 (23%), Positives = 28/78 (35%)
Frame = -1
Query: 670 GRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPST 491
G +SP P T S+ T P P STS T P S ++ +
Sbjct: 102 GSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN 161
Query: 490 GHTQSTSRSTCLCTLRSP 437
+ T+ ++C + P
Sbjct: 162 SNPLPTTSTSCTTSTSIP 179
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 1.9
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Frame = -1
Query: 760 VQYP*GSMGQXYPXQIPNQXXPRREAXPXPGRKTSPY----PVKYTLXAQCPSMSRASSV 593
V Y GS P I P P P KTSP+ P K+ + ++S+ ++
Sbjct: 140 VHYFQGSETDSIPANISVAKPPHLRRYPLPDVKTSPFLLQEPKKH--IPEGTALSQRETL 197
Query: 592 PRQGTS---ARPLPPSRSTSRTQ*KRPCRSQLTSPST-GHTQSTS 470
P G++ ++ PS S T P S T+ + GH +T+
Sbjct: 198 PNMGSAQMKSQSRTPSFSNVTTSPVPPINSNATAQTAEGHMGATN 242
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 592 PRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 464
PR+ + PLPPS + + RP S SP + T S +++
Sbjct: 392 PRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQT 434
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = -1
Query: 697 PRREAXPXPGRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPC 518
P E P K ++ A+ PS R PR+ PLPP S+ R +
Sbjct: 190 PPAEPAESPFGKRRTNSGRFRDPARDPS-DRVREEPREWVRRGPLPPRESSERPRLNLKP 248
Query: 517 RSQLTSPSTGHTQSTSRSTCLCTLRSPY 434
RS ++ +T T S + +T R P+
Sbjct: 249 RSS-SNVNTEATPSATTTTSSKPKRDPF 275
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 607 RASSVPRQGTSARPLPPS-RSTSRTQ*KRPCRSQLTSPSTG 488
RASS+P GTSA P ST+ P + TS S G
Sbjct: 90 RASSIPADGTSAFSANPQVASTNNKLTPLPSLQKTTSSSEG 130
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 10.0
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = -1
Query: 724 PXQIPNQXXPRREAXPXPGR-KTSPYPVKYTLXAQCPSM---SRASSVPRQGTSARPLPP 557
P IP + P R T P P +L P S S+P +A PLPP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 556 S 554
S
Sbjct: 452 S 452
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 569 PLTPVEKHIPYPVEKAVPFPVNIPVDRPYPVHIEKH 462
P V K+IP+ ++K V F V +D P P H
Sbjct: 231 PTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYH 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,020
Number of Sequences: 5004
Number of extensions: 36136
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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