Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_G13
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 35 0.054
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 34 0.12
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 33 0.22
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 33 0.22
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 33 0.29
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 32 0.38
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 32 0.50
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 32 0.50
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 31 0.66
At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3... 30 2.0
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 29 2.7
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 29 3.5
At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ... 29 3.5
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 29 4.6
At4g35700.1 68417.m05067 zinc finger (C2H2 type) family protein ... 28 6.1
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 28 6.1
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ... 28 8.1
At3g62580.1 68416.m07030 expressed protein 28 8.1
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 355 CGKAYTTKKTLEGHVRSHTGERPFACT--RCPSTFRYE 248
CGK + K L H R H ERPF C+ C TF+++
Sbjct: 1245 CGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQ 1282
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 355 CGKAYTTKKTLEGHVRSHTGERPFAC--TRCPSTFRY 251
C + + H+R HTGERP+ C C +FR+
Sbjct: 1275 CSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRF 1311
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTF 257
N++ H + +TL+ H + G RPFAC RC F
Sbjct: 311 NNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAF 349
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = -3
Query: 677 TNASSLX-YXHHCDMNFKNEMSYYQHMKYNLK-HV-------DPAKLKYACELCDKKFVK 525
TN L + C + E+ +H+K N+K H+ P ++K E C F K
Sbjct: 259 TNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSK 318
Query: 524 AARLEEHNMAVHPE 483
A+ L++H AVH +
Sbjct: 319 ASNLQKHMKAVHDD 332
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSHTGERPFAC--TRCPSTFR 254
NH CG + L+ H++SH+ ER F C C +++R
Sbjct: 65 NHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYR 106
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = -3
Query: 677 TNASSLX-YXHHCDMNFKNEMSYYQHMKYNLK-HV-------DPAKLKYACELCDKKFVK 525
TN L + C + E+ +H+K N+K H+ P ++K E C F K
Sbjct: 171 TNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSK 230
Query: 524 AARLEEHNMAVHPE 483
A+ L++H AVH +
Sbjct: 231 ASNLQKHMKAVHDD 244
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -3
Query: 671 ASSLXYXHHCDMNFKNEMSYYQHMKYNLKHVDPAKLKYACELCDKKFVKAARLEEHNMAV 492
A+ + ++CD F +E QH K KH + C +C KK A+ + H + V
Sbjct: 8 ATEKVWCYYCDREFDDEKILVQHQK--AKH-------FKCHVCHKKLSTASGMVIHVLQV 58
Query: 491 HPED 480
H E+
Sbjct: 59 HKEN 62
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTF 257
N++ H K +TL+ H + G +PFAC C F
Sbjct: 233 NNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAF 271
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -1
Query: 316 HVRSHTGERPFACTR--CPSTFRY 251
H+R HTG RP+ C C TFR+
Sbjct: 1310 HIRVHTGARPYVCAEPDCGQTFRF 1333
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 355 CGKAYTTKKTLEGHVRSHTGERPFAC--TRCPSTFRY 251
CGK + + K L H R H+ +RP C C TF++
Sbjct: 1267 CGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKW 1303
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSHTGERPFACTRC 269
NH+ H K +TL+ H + G +PF+C C
Sbjct: 200 NHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLC 234
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 355 CGKAYTTKKTLEGHVRSHTGERPFACT 275
CGK + L+ H HTGER + CT
Sbjct: 115 CGKKFLDSSKLKRHYLIHTGERNYICT 141
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 364 FHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFRY 251
+ CGKA++ L H+++H+ E C RY
Sbjct: 142 YEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRY 179
>At5g43170.1 68418.m05269 zinc finger (C2H2 type) protein 3 (AZF3)
identical to Cys2/His2-type zinc finger protein 3
[Arabidopsis thaliana] gi|6009889|dbj|BAA85109
Length = 193
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSH 302
+HV CGK++ T + L GH R H
Sbjct: 117 SHVCSVCGKSFATGQALGGHKRCH 140
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 623 EMSYYQHMKYN-LKHVDPAKLKYACELCDKKFVKAARLE 510
E Y+H+K N + V LK+ CEL +K K RLE
Sbjct: 323 EYYMYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLRLE 361
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 373 NHVFHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFRYEAXPVQPQQAGARGAAEDV 194
+HV + C K+++T + L GH R H P + T P+T A P P A + E V
Sbjct: 410 DHVCNICHKSFSTGQALGGHKRCH-WTAPVS-TVAPTTVP-TAAPTVPATASSSQVTETV 466
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 370 HVFHACGKAYTTKKTLEGHVRSHTGE-RPFACTR 272
H+ CGK + + K L GH R H E R F+ R
Sbjct: 79 HICCECGKRFVSGKALGGHKRIHVLETRKFSMMR 112
>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 398
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 370 HVFHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFRYEAXPVQPQQA 221
H CG +T+ + L GH+R H G A +T A P A
Sbjct: 261 HECGICGAEFTSGQALGGHMRRHRGAVVAAAAASTATVSVAAIPATANTA 310
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 355 CGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFR 254
CGK + + K L GH+R H ER + PS F+
Sbjct: 70 CGKQFGSLKALFGHMRCHP-ERQWRGINPPSNFK 102
>At4g35700.1 68417.m05067 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 275
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -1
Query: 361 HACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTFRYEAXPVQPQQAGARGAAEDVATPG 182
+ CGK + + K + GH+R H +R + P TF + G A A
Sbjct: 145 NVCGKGFASWKAVFGHLRQHK-DRGYLGFLPPPTFNAAEEGFGGVATASTGGAVATAISV 203
Query: 181 ASIPT 167
+PT
Sbjct: 204 GEVPT 208
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 626 NEMSY-YQHMKYNLKHVDPAKLKYACELCDKK 534
NE+ Y + L H + K KY CE+C+KK
Sbjct: 518 NEVHYKFDEHPLTLCHGESRKSKYWCEVCEKK 549
>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 271
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 367 VFHACGKAYTTKKTLEGHVRSHTGERPFACTRCPSTF 257
V H CG+ + + K + GH+R+H +R + P TF
Sbjct: 139 VCHICGRGFGSWKAVFGHMRAHR-DRNYQGFLPPPTF 174
>At3g62580.1 68416.m07030 expressed protein
Length = 213
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 472 WALSSGCTAMLCSSSRAAFTNFLSQSSHAYFNLAGSTC 585
WA G M + R F N S+ AYF L GS C
Sbjct: 58 WATFIGGIIMFKNLPRHQFGNLQSKLFPAYFTLVGSCC 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,362
Number of Sequences: 28952
Number of extensions: 194603
Number of successful extensions: 678
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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