Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F23
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     32   0.66 
01_06_1033 + 33955883-33956374                                         29   3.5  
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175...    29   4.6  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    28   8.1  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   8.1  

>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = -1

Query: 651 KRPKWRCSXXXSRPCAS------VTPNXGEKCSDXPKRDSLPKGSDA*SFQGEGSNQVNQ 490
           K+P+   S   S+P ++      V  N  E  +D P + S+P  S + S + +   +VNQ
Sbjct: 218 KQPRRNQSDNVSKPASNEENSVEVADNSKEYTTDHPTQSSMPSSSSSSSSESQDGAKVNQ 277

Query: 489 STTP 478
           S+ P
Sbjct: 278 SSKP 281


>01_06_1033 + 33955883-33956374
          Length = 163

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 715 DXRRSRKKEQNKNAATRYRQKKKAXXXXXXXXEQTLRQRHTEL 587
           + R++RK   N+ A  +YR+KKKA         + LR  + +L
Sbjct: 11  ELRKTRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRTTNQQL 53


>12_01_0234 +
           1755704-1756120,1756203-1756313,1756923-1757063,
           1757142-1757312,1757412-1757616,1757738-1757910,
           1758021-1758103,1758250-1758389,1758569-1758645,
           1758711-1758810,1759978-1760606
          Length = 748

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 709 RRSRKKEQNKNAATRYRQKKKAXXXXXXXXEQTLRQRHTEL 587
           ++SRK   N+ A  +YRQKKKA         + LR  + +L
Sbjct: 599 KKSRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRVINQQL 639


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 341 LSEQIRCHIIEQHKLRHHQRDTNNTL 264
           L EQ+R  I++  K +HH +D++N+L
Sbjct: 714 LDEQVRLLILDVAKEQHHYQDSHNSL 739


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 341  LSEQIRCHIIEQHKLRHHQRDTNNTL 264
            L EQ+R  I++  K +HH +D++N+L
Sbjct: 1256 LDEQVRLLILDVAKEQHHYQDSHNSL 1281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,023,148
Number of Sequences: 37544
Number of extensions: 295849
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)