Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F19
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.9  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   6.8  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    26   6.8  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.0  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 518 AICNIENHWLLYIIMFIQRKKLRESDIDPSEANFCTRRYEIKLSF 652
           A+ N+  H++ +   ++  K   +S I+P  + F TR     ++F
Sbjct: 25  AVQNLAEHYMSHGFQYLSEKSDWQSKIEPGNSYFVTRNKSSIIAF 69


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 684 VRQNASVPKYXKLSLISYRRVQKLASLGSMSDSLNFFRCINIIMY 550
           ++   ++PKY + SLI  R +Q +A     SD  N  +CI +  Y
Sbjct: 390 IKVTRAIPKYREASLIELRVLQTIAH----SDPTNENKCIQLRDY 430


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 50   FFLKQNSRKNVLIYFNKNLTNYYLFTLTIREVMCTILLIVLEISRCLENY 199
            +  K+ S    L+Y NKN    + F L  RE   T  +   +I++ L++Y
Sbjct: 851  YMAKRLSSHYKLVYTNKNNLCAHEFILDAREFKATAGVDATDIAKRLQDY 900


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 121 IYTHNSRSNVYNFINSTRNISLFGKLLI 204
           I   NS  N+Y FIN   N+ L  + LI
Sbjct: 68  ILNRNSPENLYLFINHPSNVHLVDRYLI 95


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 NFINSTRNISLFGKLLIKNCVKCLRVNQFIFGVCLI 261
           N INS + I+    +  ++C KC+    F++  CLI
Sbjct: 221 NGINSVQRIAELANVSYRSCQKCM--EHFLYYGCLI 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,814
Number of Sequences: 5004
Number of extensions: 44306
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)