Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F19
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 101 NLTNYYLFTLTIREVMCTILLIVLEISRCLE 193
           N TNYYLF+L + +++  IL + +E  + L+
Sbjct: 64  NPTNYYLFSLAVSDIIALILGLPMEFYQSLD 94


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.1 bits (57), Expect(2) = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 145 NVYNFINSTRNISLFGKLLIKNCVKCLRVNQFIF 246
           ++YN +NST ++ +  K L +    CLR   FIF
Sbjct: 81  SIYNILNSTIDVFMPMKSLFRTIALCLR-GSFIF 113



 Score = 21.0 bits (42), Expect(2) = 2.6
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +1

Query: 220 CLRVNQFIFGVCLIWFT*LT*TKNEALTLFYLEFNAKLRSVNKII 354
           CL +  F F +   W    T        +F  EFN  +  +N  I
Sbjct: 152 CLTIIGFTFTMAYFWMVADTERLTYMQNIFLEEFNQNVDDLNIFI 196


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 429 FVFLNFSSDYHFSLIYYE*TIE*VFNNFVHGSQFC 325
           FV L   S Y F ++ +  TI+   N F HG +FC
Sbjct: 33  FVLLKICSLYRFQILDFFPTIQNNKNIFSHGIKFC 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,001
Number of Sequences: 27780
Number of extensions: 236292
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)