Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F18
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    30   0.36 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    29   0.64 
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    28   1.5  
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    27   3.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.4  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   5.9  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 556 QKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATME---RVQGTRD 407
           Q++ +L   L +   +HK+L  DNA L  ++  L   ++  M+   +VQG RD
Sbjct: 135 QQLRYLRLQLSEKEDLHKKLSVDNAHLIKQLDLLSSNMKTLMKEKTKVQGQRD 187


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 565 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSK 389
           A+ + IS+ E  L        ++   N DL+ E  KL+ +++A +ER Q  +++ +  K
Sbjct: 299 AENKTISY-EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVK 356


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 429 NVXKALETALKEAKDGAMRDRKRYQFEVDRIKE 331
           N+ K  E    E +D   R  K+Y FE+D  +E
Sbjct: 4   NLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEE 36


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 562 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPK 458
           Q +KI  L+N++E+     K L  +N DL+ ++ K
Sbjct: 89  QLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAK 123


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 529 LEQLTKVHKQLVRDNADLRCEVPKLEKRLRA-TMERV-QGTRDSAQGSKRRCNARSQ 365
           L +  KV +++ R+N  LR ++  LEKRL +   E++ +  +D+ +    R N + Q
Sbjct: 151 LREQEKVLEKVSRENFGLRIKIVCLEKRLESMAPEQIKEAVKDNVELHAERANLQLQ 207


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -3

Query: 493 RDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRRCNARSQTIPVRSGQNQGSRA 323
           +DN DLRC V K  K+L  +   ++ T        RR   R +       QNQ S A
Sbjct: 184 KDN-DLRCRVNKKAKKLFGSEPSIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNA 239


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 446 SFLQLGHFASQVGIVTHELLVDFRQLLQVILQERDLLFL 562
           S  Q G+F S  GI+   LL+ F  L +  L +RD++ L
Sbjct: 315 SSFQAGNFLSLAGIINVPLLLIFSYLTR-YLTDRDIILL 352


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 561 KNKRSRSWRITWSN*RKSTSSSCVTMPTCDAKCPSWRNDSE 439
           K K+ + W + + +  K TS+ C+T        PS+ + +E
Sbjct: 269 KKKKEQKWTLKFES-DKGTSTQCITHQPLPGSTPSFASGTE 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,499
Number of Sequences: 5004
Number of extensions: 34514
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)