Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F18
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430...    32   0.51 
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    30   2.0  
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295...    29   3.6  
09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178...    28   8.3  
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485...    28   8.3  

>06_03_1311 -
           29241884-29242054,29242802-29242879,29242968-29243049,
           29243141-29243212,29243316-29243437,29243541-29243596,
           29244264-29244333,29244435-29244518,29244599-29244667,
           29244855-29244928,29245014-29245125,29245220-29245510
          Length = 426

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 451 SPAWALRIAGRHCHARAACGLSSVAPGYSPRTRS 552
           SPA    + GR CH  AA G  S  P   PR RS
Sbjct: 8   SPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRS 41


>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
            29268651-29268719,29268803-29268946,29269775-29270011,
            29270897-29270998,29271131-29271396,29271766-29273410,
            29274449-29275018
          Length = 1379

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 469  EVPKLEKRLRATMERVQGTRDSAQGSKRRCNARSQTIPVRSGQN 338
            ++PK  KR R   E  +G +   +G   + N+R  T+  + GQN
Sbjct: 1171 DLPKSSKRRREDHESHRGGKVDVKGVSEQENSRDHTVSSKKGQN 1214


>09_04_0381 +
           17128437-17128655,17129250-17129331,17129409-17129564,
           17129646-17130431,17130743-17131094,17131467-17131548,
           17131756-17131833,17132041-17132055
          Length = 589

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 568 LAQKQKISFLENNLEQLTK-VHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQ 398
           L + + IS +E   E++T   H Q  +  A ++  V K+EK+  ++++++  T  SAQ
Sbjct: 524 LTEAKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQ 581


>09_04_0288 +
           16416409-16416603,16417584-16417635,16417842-16417890,
           16418354-16418497,16418730-16418783,16418883-16418948,
           16419174-16419252,16419390-16419467
          Length = 238

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 454 PAWALRIAGRHCHARAACGLSSVAPGYSPRTRSFVFVQGNRLPPRRPLXNCSILYPRLQV 633
           P+ A   A       + CGL S+  G + R  S  F    R PP  PL  CS    +++V
Sbjct: 14  PSQAASSASSSSFPTSICGLGSL--GDASRVSSVSF---RRRPPASPLVRCSQDPGKIEV 68

Query: 634 LNKE 645
            N E
Sbjct: 69  FNTE 72


>05_03_0249 -
           10946993-10947073,10947307-10947432,10948497-10948552,
           10949066-10949338,10951434-10951716
          Length = 272

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -1

Query: 402 LKEAKDGAMRDRKRYQFEVDRIKEAVR 322
           L+EAK G++ + ++YQ E+ R+ E V+
Sbjct: 131 LEEAKHGSVEEIQQYQKEISRLNEQVQ 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,375
Number of Sequences: 37544
Number of extensions: 258104
Number of successful extensions: 873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)