Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F18
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy c...    83   2e-16
L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated p...    83   2e-16
AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy...    83   2e-16
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    29   5.6  
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    29   5.6  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    29   5.6  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    29   5.6  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy
           chain protein.
          Length = 815

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = -3

Query: 565 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKR 386
           AQKQ+I FLENNL++LTKVHKQLVRDNADLR E+PK+E RLR   +R++    + + SK+
Sbjct: 696 AQKQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQ 755

Query: 385 RCNA 374
           R  A
Sbjct: 756 RSQA 759



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = -1

Query: 420 KALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNLARRGPQAQIAKPIR 268
           K LETAL+++K  +  +RK+YQ EV+RIKEAVR +N+ RR    QI KPIR
Sbjct: 744 KILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQIVKPIR 793


>L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated
           protein 116 protein.
          Length = 815

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = -3

Query: 565 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKR 386
           AQKQ+I FLENNL++LTKVHKQLVRDNADLR E+PK+E RLR   +R++    + + SK+
Sbjct: 696 AQKQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQ 755

Query: 385 RCNA 374
           R  A
Sbjct: 756 RSQA 759



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = -1

Query: 420 KALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNLARRGPQAQIAKPIR 268
           K LETAL+++K  +  +RK+YQ EV+RIKEAVR +N+ RR    QI KPIR
Sbjct: 744 KILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQIVKPIR 793


>AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy
           chain protein.
          Length = 815

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = -3

Query: 565 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKR 386
           AQKQ+I FLENNL++LTKVHKQLVRDNADLR E+PK+E RLR   +R++    + + SK+
Sbjct: 696 AQKQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQ 755

Query: 385 RCNA 374
           R  A
Sbjct: 756 RSQA 759



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = -1

Query: 420 KALETALKEAKDGAMRDRKRYQFEVDRIKEAVRAKNLARRGPQAQIAKPIR 268
           K LETAL+++K  +  +RK+YQ EV+RIKEAVR +N+ RR    QI KPIR
Sbjct: 744 KILETALRDSKQRSQAERKKYQQEVERIKEAVRQRNM-RRMNAPQIVKPIR 793


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 328 GFLDSVHFELVSFAIAHCTVFCFLERC 408
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 328 GFLDSVHFELVSFAIAHCTVFCFLERC 408
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 328 GFLDSVHFELVSFAIAHCTVFCFLERC 408
           G LD  HF    F +AHC    +  RC
Sbjct: 782 GVLDKAHFGATQFGLAHCAFELYGHRC 808


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/76 (22%), Positives = 37/76 (48%)
 Frame = -3

Query: 562 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRR 383
           QK+  + ++ N+  L++  + L+    +L+ E+ ++  +LR +  +V G  +     KRR
Sbjct: 415 QKENKTIVKENV-YLSESKQVLLESEINLKNELDEMAVKLRNSQHQVAGLNEKISEEKRR 473

Query: 382 CNARSQTIPVRSGQNQ 335
              +   +     QNQ
Sbjct: 474 RKKQDADVTRLDEQNQ 489


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/76 (22%), Positives = 37/76 (48%)
 Frame = -3

Query: 562 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRR 383
           QK+  + ++ N+  L++  + L+    +L+ E+ ++  +LR +  +V G  +     KRR
Sbjct: 415 QKENKTIVKENV-YLSESKQVLLESEINLKNELDEMAVKLRNSQHQVAGLNEKISEEKRR 473

Query: 382 CNARSQTIPVRSGQNQ 335
              +   +     QNQ
Sbjct: 474 RKKQDADVTRLDEQNQ 489


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
            protein F35D11.11a protein.
          Length = 1840

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = -3

Query: 538  ENNLEQLTKVHKQLVRDNADLRC-------EVPKLEKRLRATMERV--QGTRDSAQGSKR 386
            E  + +LTK+H+ L+ ++  L+        EV +L++++R  +E++  Q   D A+ S  
Sbjct: 820  EARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNE 879

Query: 385  R 383
            R
Sbjct: 880  R 880


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
            protein F35D11.11c protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = -3

Query: 538  ENNLEQLTKVHKQLVRDNADLRC-------EVPKLEKRLRATMERV--QGTRDSAQGSKR 386
            E  + +LTK+H+ L+ ++  L+        EV +L++++R  +E++  Q   D A+ S  
Sbjct: 820  EARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNE 879

Query: 385  R 383
            R
Sbjct: 880  R 880


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
           protein F35D11.11d protein.
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = -3

Query: 538 ENNLEQLTKVHKQLVRDNADLRC-------EVPKLEKRLRATMERV--QGTRDSAQGSKR 386
           E  + +LTK+H+ L+ ++  L+        EV +L++++R  +E++  Q   D A+ S  
Sbjct: 580 EARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNE 639

Query: 385 R 383
           R
Sbjct: 640 R 640


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
            protein F35D11.11b protein.
          Length = 1911

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = -3

Query: 538  ENNLEQLTKVHKQLVRDNADLRC-------EVPKLEKRLRATMERV--QGTRDSAQGSKR 386
            E  + +LTK+H+ L+ ++  L+        EV +L++++R  +E++  Q   D A+ S  
Sbjct: 820  EARMNELTKIHEMLMEEHDQLKVDHLHTEEEVERLKEKMRKELEKLNEQNDGDRAEWSNE 879

Query: 385  R 383
            R
Sbjct: 880  R 880


>Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical
           protein F47A4.3b protein.
          Length = 742

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 119 KVHRCTYEERRNSIXEIYPL 60
           ++HRC +E R + + E++PL
Sbjct: 72  QLHRCVFERRHSRLDELFPL 91


>Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical
           protein F47A4.3a protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 119 KVHRCTYEERRNSIXEIYPL 60
           ++HRC +E R + + E++PL
Sbjct: 89  QLHRCVFERRHSRLDELFPL 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,937
Number of Sequences: 27780
Number of extensions: 208018
Number of successful extensions: 770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)