Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F16
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 38 0.002
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 33 0.047
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 2.3
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 27 3.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 4.1
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 5.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 7.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 7.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 9.4
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 9.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.4
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = -2
Query: 559 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKD 380
A+ + IS+ E L ++ N DL+ E KL+ +++A +ER ++L+ AL+ K+
Sbjct: 299 AENKTISY-EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKN 357
Query: 379 DAMRDRKRYQFEVDRIKEAVRAKN 308
D R+ +KEA + N
Sbjct: 358 DEKNLREMNANYETEMKEARQKLN 381
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.1 bits (72), Expect = 0.047
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Frame = -2
Query: 658 LHNLRKLFVQDLQARIKKSNNXXXXXXXXXGSLAQKQKISFLENNLEQLTKVHKQLVRDN 479
L NL KLF + K Q+ LE +++Q++ +L + N
Sbjct: 181 LTNLEKLFADSREQLETKCKELAAAEQQLQELSVHNQQ---LEESIKQVSS-SIELEKIN 236
Query: 478 ADLRCEVPKLEKRLRATMERVKALET------ALKEAKDDAMRDRKRYQFEVDRIKEA 323
A+ R ++ +LEK A ER++ L + LKE K+D + K Y+FE R K A
Sbjct: 237 AEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDL--ESKLYRFEEYRDKVA 292
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 550 QKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDDAM 371
QK+S + L TK+ N DLR V E +L+ +++K + + L+ K +
Sbjct: 385 QKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYE 444
Query: 370 RDRKRYQFEVDRIK 329
++ + + RI+
Sbjct: 445 EEKSMNENLLVRIQ 458
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 129 VENLMKVHRCTYEERR--NSILKYIHYNITIVLREA 28
V NLMK+ RC +E +S+L++ + +T +L A
Sbjct: 1099 VSNLMKIFRCWFENEAYLDSVLEFSSHILTALLNTA 1134
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = -2
Query: 424 ERVKALETALKEAKD--DAMRDRKRYQFEVDRIKEAVR-AKNLARRGPQAQ 281
ER KA + A +AK+ DA R+R+R + ++ EA+R A+ A R + +
Sbjct: 754 ERDKAYQEAYAKAKNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEE 804
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 556 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPK 452
Q +KI L+N++E+ K L +N DL+ ++ K
Sbjct: 89 QLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAK 123
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -2
Query: 553 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDDA 374
++ IS + +E+LT QL D E +L+KRL+ E + +
Sbjct: 591 EESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNL 650
Query: 373 MRDRKRYQFEVDRIKE 326
+ K + EVD +++
Sbjct: 651 LEQLKMTEAEVDSLRK 666
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 440 SFLQLGHFASQVGIVTHELLVDFRQLLQVILQERDLLFL 556
S Q G+F S GI+ LL+ F L + L +RD++ L
Sbjct: 315 SSFQAGNFLSLAGIINVPLLLIFSYLTR-YLTDRDIILL 352
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 555 KNKRSRSWRITWSN*RKSTSSSCVTMPTCDAKCPSWRNDSE 433
K K+ + W + + + K TS+ C+T PS+ + +E
Sbjct: 269 KKKKEQKWTLKFES-DKGTSTQCITHQPLPGSTPSFASGTE 308
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 415 KALETALKEAKDDAMRDRKRYQFEVDRIKE 326
K E E +D+ R K+Y FE+D +E
Sbjct: 7 KMYEVEPSEKEDNVERQTKKYNFEIDEPEE 36
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 7.1
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = -2
Query: 553 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDDA 374
KQKIS+LE+ LE L +L+R++ L CE K L + +++ LK +
Sbjct: 876 KQKISYLESQLEGL----HELLRESQRL-CE--GRTKELLNSQQKL----YDLKHSYSSV 924
Query: 373 MRDRKRYQFEVDRIKEAVRAKNLARRGPQAQIA 275
M ++ + +V+ + E +AK R+ + QIA
Sbjct: 925 MTEKSKLSDQVNDLTE--QAKITQRKLSEVQIA 955
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 448 EKRLRATMERVKALETALKEAKDDAMRDRKRYQFEVDRIKEAVRAKN 308
E+RL+ KALE ++ ++ A + K + + +IKE R+ N
Sbjct: 368 EERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGN 414
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 550 QKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATME 422
Q++ +L L + +HK+L DNA L ++ L ++ M+
Sbjct: 135 QQLRYLRLQLSEKEDLHKKLSVDNAHLIKQLDLLSSNMKTLMK 177
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 165 LEMKVEAICSHVVENLMKVHRCTYEERRNSILKYIHYNITIVLREA 28
LEM + C + +++K H T +E+ S +K I++ TI+ ++
Sbjct: 197 LEMAEKEYCRRI--DILKCHYETIDEKDYSFVKMINFAETIIANKS 240
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 523 LEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVKALETALKEAKDDAM 371
LE+LT + +L +NA ++ E+ L K+ + + LKE K DA+
Sbjct: 1097 LEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKE-KSDAL 1146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,040
Number of Sequences: 5004
Number of extensions: 43496
Number of successful extensions: 160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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