Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F14
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    30   0.45 
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   0.59 
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    29   1.0  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 83  STYETVKH-YSIVEFD*FIVSSIAFDNKDISDNYLSKLSSNKL 208
           STY+ +K+ + + +   F  S+  F N + SDN +S L S +L
Sbjct: 513 STYKVLKNDFQVFDLLNFFHSTFLFQNYEFSDNVISLLKSRRL 555


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 516 RWGHSPPRLATWRPRPVRATDASKAAETRTGPSFTNTSHGRPK 644
           R G  PPR ++ RPR      +S    T   PS T T+  +PK
Sbjct: 229 RRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPK 271


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 591 PLYLRPWRGPGEAAKSPDEAENDPIGPLLIVFQKRFKIMTPPAP 460
           PL  + W GP        +  N P+ P++   QK F +  P  P
Sbjct: 133 PLIKKFWPGPLSILLPVVDEANPPVSPIVTAGQKTFAVRMPQHP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,080
Number of Sequences: 5004
Number of extensions: 54127
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)