Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F12
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    29   5.3  
Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -3

Query: 688 TQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSK 509
           T+ P     PT+  SP+ SP + +       P K     + +SS+++ T +  +C  K +
Sbjct: 349 TRAPAVPITPTEPASPVESPVKEQ-------PQKAPKAQMRRSSKRT-TKNNERCEQKEE 400

Query: 508 CLLTSPTRSTKEVQVPLVK 452
             + +P R +    VP V+
Sbjct: 401 EPIVNPKRRSARRLVPPVE 419


>Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical
           protein C05C10.4 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 709 PVHVESPTQCPYASQCP 659
           PVHV+ P QC  +  CP
Sbjct: 146 PVHVDGPDQCAASQNCP 162


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 482 YQGSSSAARQRSTLPGQ-VPRPYLLQE 405
           Y+ SSS++   S++P    PRPY L+E
Sbjct: 703 YKSSSSSSSSTSSIPSDPAPRPYFLKE 729


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,156
Number of Sequences: 27780
Number of extensions: 245724
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)