Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F12
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   4.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   4.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   4.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   4.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   4.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 197 NNAHNNQLIHRTQPQNRERPN 259
           NN HN+Q  H ++  NR   N
Sbjct: 443 NNQHNDQAHHSSKSNNRHNNN 463


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 567 VRFWYWHFNGDRIGLLYFDLVGLVN-GDLNFVGHWLAYGHWVGLSTWTG 710
           ++F  W FNGD++ L  ++    V+  D    G W        L+T+ G
Sbjct: 167 MKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINVPAYLNTYKG 215


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 457 VKEVPYPVKYHVPIYF 410
           ++++P PV   VP+Y+
Sbjct: 108 IEQIPVPVPVPVPVYY 123


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 457 VKEVPYPVKYHVPIYF 410
           ++++P PV   VP+Y+
Sbjct: 108 IEQIPVPVPVPVPVYY 123


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 457 VKEVPYPVKYHVPIYF 410
           ++++P PV   VP+Y+
Sbjct: 108 IEQIPVPVPIPVPVYY 123


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 457 VKEVPYPVKYHVPIYF 410
           ++++P PV   VP+Y+
Sbjct: 108 IEQIPVPVPVPVPVYY 123


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 457 VKEVPYPVKYHVPIYF 410
           ++++P PV   VP+Y+
Sbjct: 341 IEQIPVPVPVPVPVYY 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,732
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)