Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F09
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   116   3e-27
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    57   3e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    52   7e-08
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   4.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.2  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    26   5.5  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   7.3  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    25   9.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  116 bits (280), Expect = 3e-27
 Identities = 58/104 (55%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
 Frame = -1

Query: 793 SIQXK-TAVFXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRR 617
           S+Q K +A F   IP  V  A C +PPK  +      G     +   +R+ +QFSAMFRR
Sbjct: 332 SVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRR 391

Query: 616 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTE 485
           KAFLHWYTGEGMDEMEF EAESN+NDLVSEY QYQEA  ++  E
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDE 435


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
 Frame = -1

Query: 781 KTAVFXRGIPXXVKTARCDIPP---------KV*RCRLRLSGTRQPSRNYXKRISEQFSA 629
           +T  F    P   K   CD PP         KV R    LS T   +  +  R+  +F  
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAW-SRLDHKFDL 397

Query: 628 MFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDD 491
           M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y +  + + E D
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEVD 443


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = -1

Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
           KV R    LS T   +  +  R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L
Sbjct: 374 KVNRAVCMLSNTTSIAEAW-SRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 432

Query: 535 VSEY 524
             +Y
Sbjct: 433 ERDY 436


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +1

Query: 241 IESFEMVVGPPGTLGLVSARDLASNYTREG*I*QHPRDS---PYYAASMRFRFESELQRS 411
           I   E V  P   L  ++    +  Y  EG     PR+S   P  + S      S LQ +
Sbjct: 184 ITKSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPLLSVSA-LSSSSHLQPT 242

Query: 412 **GSEVRSSHGARPAPTPP 468
              S     + +RPAPTPP
Sbjct: 243 SATSSSSRLYPSRPAPTPP 261


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 758 DPXXRENSPVRHPSQGLKMSSTFIGXTTAIQELXQENIRAVL 633
           DP    N+P+ +P     M+ T+   T+  +E+ +E ++  L
Sbjct: 567 DPDGTWNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCL 608


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 299 RADTRPSVPGGPTTISKLSMRSRTTTRHSFDESQSAK 189
           RAD    VPGG   IS L M  +    + F++ Q +K
Sbjct: 130 RADHEEPVPGGYKNISVLRMNCQKFLPNFFEKGQLSK 166


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 543 LTLLSASLNSISSMPSPVYQ 602
           LT LS +LNS+  M SP+Y+
Sbjct: 234 LTCLSGTLNSLVEMLSPLYE 253


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 557 CF--VELHLVHALAGVPVQESFTSEHGRE 637
           CF  +E  L HA+  +P  +SF    GRE
Sbjct: 250 CFDKLEAKLAHAMMSIPATKSFEIGSGRE 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,120
Number of Sequences: 5004
Number of extensions: 48467
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)