Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F06
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    29   4.0  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical
           protein F10D11.2 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 794 EXEVXXPTYESXEXPTXQRPVDSPTXIRA*XYPVHVKXLPRTVHKPVPYELRSP 633
           E ++   T+   E    Q+P+++P  +    YPV +   P  +H P+     SP
Sbjct: 147 EEKIENDTFGQNEVTVNQQPINNPMPV----YPVPISHEPANLHSPIRNRSISP 196


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 642 KVPVDSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 475
           + P    T ++  SP+ SP+K Q Q   K+    S K  T +  +C  K +  + +P R 
Sbjct: 350 RAPAVPITPTEPASPVESPVKEQPQKAPKAQMRRSSKRTTKNNERCEQKEEEPIVNPKRR 409

Query: 474 TKEVQVPLVK 445
           +    VP V+
Sbjct: 410 SARRLVPPVE 419


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -2

Query: 696 RPCEXPTQD--RTQASALRVKVPVDSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKR 523
           +P   PT +   T     +VKV   S T+    +  R P++ + Q +T  S K +T    
Sbjct: 74  KPATTPTPEPTTTPVEEEKVKVSPSSSTKESFENSAREPVEYE-QRITSESSKGITAVTG 132

Query: 522 KCLMKSKCLLTSPT 481
           K  MK K    SPT
Sbjct: 133 KDFMK-KLGRKSPT 145


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -2

Query: 690 CEXPTQDRTQASALRVKVPVDSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRK 520
           C   T+DR+++ + R +    SPTRS  RSP   P + +     +S RKS + S +K
Sbjct: 181 CTDETRDRSRSRSPRRRSRSRSPTRS--RSP---PARRRSPGSDRSDRKSRSASPKK 232


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 475 YQGSSSAARQRSTLPGQ-VPRPYLLQE 398
           Y+ SSS++   S++P    PRPY L+E
Sbjct: 703 YKSSSSSSSSTSSIPSDPAPRPYFLKE 729


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,761,740
Number of Sequences: 27780
Number of extensions: 253783
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)