Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F05
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 579 WYXXGVRNWLLDMDGHWAXXVYFNGV-GHWFFYRVW 683
           WY   ++ W LD     A   +F G+ GH+FF   W
Sbjct: 77  WYFRDLQWWGLDYPPLTAYVSWFFGIIGHYFFNPEW 112


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = -1

Query: 732  PVHIPKPGXTPVEKXRPIPGRKTSALXXXXXXXXXXXXXXREASSVPRXXTSARPLPPSR 553
            PV  P  G  PV    P+P  K   +                 SSVP   ++A P P S 
Sbjct: 1218 PVPTPSAGLPPV----PVPTAKAPPVPAPSSEAPSVSTPR---SSVPSPHSNASPSPTSS 1270

Query: 552  STSRTQ*KRPCRSQLTSPSTGHTQSTS 472
            S +     R   S+  S +  H  STS
Sbjct: 1271 SMASAAPARTSVSRSKSKAERHETSTS 1297


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
 Frame = -1

Query: 684 PIPGRKTSALXXXXXXXXXXXXXXREASSVPRXXTSARPL----PPSRSTSRTQ*KRPCR 517
           PIP   TS+                 ++S+P    S  P+    PP+ ++S +    P  
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321

Query: 516 SQLTSPSTGHTQSTSRSTCLCTLRSP 439
           +  T  S+    STS S    T   P
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTSTSIPP 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,419
Number of Sequences: 5004
Number of extensions: 38168
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)