Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F04
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    30   1.8  
08_02_1461 - 27299891-27301870                                         29   4.2  
07_03_0491 - 18707721-18708179                                         29   4.2  
12_02_1100 + 26077776-26077893,26078208-26078434                       28   7.4  
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678...    28   9.7  
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544...    28   9.7  

>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 292 LLHGAVEMYNNMYFTGGRTSCESARVGTTTL 200
           LLH A  + +N   T G TSC  AR G  T+
Sbjct: 13  LLHAAAAIGHNETSTSGNTSCTPARCGNLTI 43


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 155 HSSSPNALLLHGRNRQGGGTYPRGLTRGPTTSKI 256
           H++     LL GR R GGG + RGL   P  S++
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRM 315


>07_03_0491 - 18707721-18708179
          Length = 152

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 582 QGGPELSQHQDRAHRRRLTTHGQQSRRHCYRGEER 478
           +GG  +S+H++R  RRR   H   +  H  RGEER
Sbjct: 108 EGG--VSRHRERRWRRRTPPHAVIADTHRRRGEER 140


>12_02_1100 + 26077776-26077893,26078208-26078434
          Length = 114

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 297 NAYYTAPWRCIIICILLVVGPLVSPRG 217
           +++   PW C+ +C+L+ V  LV P G
Sbjct: 32  SSFVFTPWLCMHVCLLVTVLRLVIPAG 58


>01_07_0311 +
           42667114-42667132,42667336-42667367,42667449-42667822,
           42667895-42668028,42668147-42668303,42668994-42669098,
           42669342-42669645,42670404-42670478,42671467-42672589,
           42673686-42673727,42674017-42674111,42674199-42674239,
           42674375-42674414
          Length = 846

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 525 THGQQSRRHCYRGEERLWNKVFLKIHVRSTL 433
           +HG    + C+RGE+ +W +  L I V   L
Sbjct: 773 SHGFDQNQQCHRGEDPIWEENSLNILVEFML 803


>01_06_1630 +
           38753016-38753209,38753904-38754039,38754291-38754404,
           38755053-38755112,38755223-38755252,38755523-38756206
          Length = 405

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 145 TAASLFKPKRITASRQK*AGWWYLPARTHKRSYHQ*NTYYYTSPRRRVVGIKCLN 309
           TA   F  KR+T SR   +GW     R    S    + + Y +  R    ++C N
Sbjct: 5   TAFFRFSAKRLTLSRLMLSGWPAASPRLQSTSMQSSHPWQYATESRGAGTVRCPN 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,811,943
Number of Sequences: 37544
Number of extensions: 438576
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)