Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F04
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   9.9  

>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 161 SSPNALLLHGRNRQGGGTYP--RGLTRGPTTSKIH 259
           SS N+  L  +NR+G GTYP   G  +    +K+H
Sbjct: 724 SSDNSFSLEDKNREGPGTYPLRSGNAKPDVLAKLH 758


>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 644  PIMKWK*T*PEEKLENLDEVLKADPSCPSIKIEPIGDVSLP 522
            PI +W+ +    KL+ L EVL  D  C   K+ P GD  +P
Sbjct: 1457 PIEEWRPSELGHKLDRLAEVLIIDECC---KVPPWGDKEVP 1494


>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 599 FQVSPPVMSTSISLSAGFSFLCDEARFLGREGTCHXN*FPIW 724
           F+V     S  ++L  G SF+ D    LG  G    N  P W
Sbjct: 2   FEVFAVYFSVLVALVEGNSFIMDNLSLLGLSGEVFTNFLPSW 43


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -1

Query: 690 SRPKKRASSHRKLKPADNEMEVDMTGGET*KLRRGPQGGPELSQHQDRAH--RRRLTTHG 517
           S   +R S H++    D     D +  ++  LRR  +     S+  +R    R R T H 
Sbjct: 283 SLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSRSRSTEHR 342

Query: 516 QQSRRHCYRGEER 478
            +SR    R + R
Sbjct: 343 YRSRSRSPRRKHR 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,338,195
Number of Sequences: 59808
Number of extensions: 480856
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)