Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F04
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    28   6.6  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 683 PRNEPHRTGN*SLPIMKWK*T*PEEKLENLDEVLKADPSCPSIKIEPIGDVSLPMASSQE 504
           P N  +  GN  +P   ++   P  KLE L  +L   P+  S++ +  G+    MA    
Sbjct: 158 PCNNNNNNGNEYIPTYNYENEAPWAKLEPLTPILDVSPAA-SVQSKVDGNHKKEMAKKYS 216

Query: 503 DTATEEKN 480
               E+KN
Sbjct: 217 AKCLEKKN 224


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 693 PSRPKKRASSHRKLKPADNEME 628
           P  PKKR +  RK K   NEME
Sbjct: 823 PKNPKKRKTERRKQKQDGNEME 844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,124
Number of Sequences: 27780
Number of extensions: 357976
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)