Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F02
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    70   3e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    39   7e-04
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    39   7e-04
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    29   0.59 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.5  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   9.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -2

Query: 702 FLHWYTGXGMDEMEFTEAESNMNDLVSEYQQ 610
           FLHWYTG GMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 776 GXXPXIQELFKRXSXQFXXXFRR 708
           G    IQE+F+R   QF   FRR
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRR 391


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 702 FLHWYTGXGMDEMEFTEAESNMNDLVSEYQQ 610
           F+HWY G GM+E EF+EA  ++  L  +Y++
Sbjct: 408 FVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 702 FLHWYTGXGMDEMEFTEAESNMNDLVSEYQQ 610
           F+HWY G GM+E EF+EA  ++  L  +Y++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 172 ILDIKIKFSLIKKKDLFPLCDSVTAPRACSAEGLASL 282
           ++D  IK +L+KKK ++    +  A + C+A G ASL
Sbjct: 158 LIDYAIKMALLKKKPVYIEVPTNVASQPCAAPGPASL 194


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 431 SYYINTKSKSIVDLSKGERWKGG 499
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 60  SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 176
           SKTL DL+K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 458 FCFSYLYSNFNSFRLQHA**NNLGSTR 378
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 358 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 269
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 78  LEKKKLYDIN*LSLEKANNSSHWLQNEELKL------HLRY*NQVQPYKKKRSFP 224
           LEK    D N L L++  N    L   EL+L      +L Y N + PY+   S+P
Sbjct: 115 LEKVSTADNN-LVLQELENLRERLNQVELQLSERPSSYLGYHNNLSPYRSPNSYP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,231
Number of Sequences: 5004
Number of extensions: 45792
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)