Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F01
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459           34   0.11 
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069     29   3.1  
05_03_0039 - 7621613-7622695                                           29   3.1  
10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308           29   4.1  
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375...    28   7.1  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    28   7.1  
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537...    28   9.4  

>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
          Length = 341

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = -2

Query: 671 LPPLKYTLXAQCPSMSRS---QFRTPSRYQCPPLTPSR--STSRTQ*KRPCRSQLTSPST 507
           +PP   T+ A  P+  RS   + R  +    PPL P +  + +    KRP  S  ++ S 
Sbjct: 1   MPP---TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSC 57

Query: 506 GHTQ--STSRSTCLCTLRSPYRTQLRYRYQ 423
            H++  S + +TC  +L +  R + R RYQ
Sbjct: 58  FHSEVISATSTTCPTSLAAAQRPEKRPRYQ 87


>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
          Length = 228

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 470 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 559
           +GTC    T  G+ TGM TG  T   TG G
Sbjct: 99  SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 607 PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 491
           P+ G    P P  + HP P  + +  P  HP  +  P P
Sbjct: 162 PKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 610 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 491
           VP       P P  + HP P  + +  P  HP+ +  P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228


>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
          Length = 735

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -2

Query: 131 LWLSYEKLSPIFISNSK*VLVAREIKVFFSNNKQIL 24
           ++ S +K +P++IS  + +  AREIKV  +NN  I+
Sbjct: 433 MYKSRKKGTPLYISGKR-MFTAREIKVITNNNSTII 467


>10_07_0107 -
           12936839-12937030,12937305-12937386,12937476-12937586,
           12937667-12937918,12938004-12940237,12940328-12940525
          Length = 1022

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -2

Query: 752 PXPXHIXQTXALPRXEARPIPGRKTSALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTP 573
           P P H+     L     +P P    S  PPL        P   ++   +P++   PP  P
Sbjct: 577 PSPRHLPSPPPLRSPPRQPTPPPSPSQQPPL------PTPQPVQASPTSPTKQHAPPAPP 630

Query: 572 SRSTS 558
           S  TS
Sbjct: 631 SVQTS 635


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 665 PLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 486
           P+K    +   S S  + R+PSR   P  +P R  S +  K P +S+  S S    +  +
Sbjct: 238 PVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSAS--KSPVKSRSLSRSPSPVRDIN 295

Query: 485 RSTCLCTLR 459
           +  C+  L+
Sbjct: 296 QKLCIFRLQ 304


>07_03_1164 +
           24451808-24451868,24452690-24452923,24453735-24453768,
           24454372-24454627
          Length = 194

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 SMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 559
           +M  GT F+  TG G +TG   G GT   TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,788
Number of Sequences: 37544
Number of extensions: 267995
Number of successful extensions: 1156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)