Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F01
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    31   0.68 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    30   2.1  
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    29   3.6  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    29   3.6  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   8.4  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = -2

Query: 632 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 453
           S SRS+ R+  R +    + SRS SR++   P RS+  S S   ++S SRS      RSP
Sbjct: 212 SRSRSRSRSRDRRRSRSRSSSRSKSRSR-SPPKRSRRESKSKSRSRSRSRSADNRKSRSP 270

Query: 452 YRT 444
            R+
Sbjct: 271 SRS 273


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 564 HIPYPVEKAVPFPVNIPVDRPYPVHI 487
           H+P PV   VP P+ +PV  P P  +
Sbjct: 155 HVPVPVPVQVPVPIRVPVPVPVPTPV 180


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 561 IPYPVEKAVPFPVNIPVDRPYPVHIEKHVPV 469
           +P PV + VP P+ +P+  P P+ +   VPV
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 558 PYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHI 463
           P PV   VP PV +P+  P P+ +   VPV +
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 561 IPYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHI 463
           IP PV    P P  +PV  P P+ +   +PV +
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPV 41


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -2

Query: 716 PRXEARPIPGRKTSALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRP 537
           P    R  P +  S  P    +     P+ +R + R+PS  + PP  P R+ SR+  K P
Sbjct: 315 PPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRR-RSPSASKSPPPAPKRAKSRS--KSP 371

Query: 536 CRSQLTSPSTGHTQSTSR 483
              +  SPS   +    R
Sbjct: 372 PARRRRSPSASKSPPAPR 389


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = -2

Query: 677 SALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHT 498
           SA+   + T  ++  S SRS+ R+    Q   L  +RS S  + +R   ++  SPS+  +
Sbjct: 75  SAIRSAQSTASSRSRSRSRSRSRSTMNQQIR-LARTRSASGGKLRRSRSARRRSPSSSAS 133

Query: 497 QSTSRSTCLCTLRSPYRTQLRYR 429
           +S SRST     +S     +RYR
Sbjct: 134 RSRSRSTSRTRAQS---IPIRYR 153


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = -2

Query: 677 SALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHT 498
           SA+   + T  ++  S SRS+ R+    Q   L  +RS S  + +R   ++  SPS+  +
Sbjct: 75  SAIRSAQSTASSRSRSRSRSRSRSTMNQQIR-LARTRSASGGKLRRSRSARRRSPSSSAS 133

Query: 497 QSTSRSTCLCTLRSPYRTQLRYR 429
           +S SRST     +S     +RYR
Sbjct: 134 RSRSRSTSRTRAQS---IPIRYR 153


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 605 PSRY-QCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYR 447
           PSR+ Q  PLTPS STS +Q   P +    SP  G +  T RS       +P+R
Sbjct: 577 PSRHAQHSPLTPSTSTSSSQLLAPPK----SPQPGTSSQTFRSQASRLPIAPHR 626


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -2

Query: 701 RPIPGRKTSALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQL 522
           +P P   TSA PP    + +Q P MS +    PS  Q P L      +    +RP + + 
Sbjct: 108 QPPPQLATSAQPPQPPVINSQLPRMSPAPAIPPSMAQ-PLLQSPSPGADIAIRRPSKEKT 166

Query: 521 TSPS---TGHTQSTSRSTCLCT 465
              S   TG +    R+  +C+
Sbjct: 167 DEKSVDETGGSDKKKRTEVICS 188


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoidance
            abnormal protein9 protein.
          Length = 937

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 719  LPRXEARPIPGRKTSALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTS 558
            +P  E   IP ++TS+ PP +         M R   +  S  Q PPL P+   S
Sbjct: 883  IPSIELPNIPTKQTSSTPPHRAVSPRLRADMFRRHQQPASFDQSPPLPPTNDKS 936


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory channel
            protein.
          Length = 937

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 719  LPRXEARPIPGRKTSALPPLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTS 558
            +P  E   IP ++TS+ PP +         M R   +  S  Q PPL P+   S
Sbjct: 883  IPSIELPNIPTKQTSSTPPHRAVSPRLRADMFRRHQQPASFDQSPPLPPTNDKS 936


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 626 SRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 477
           SRS+ R+ SR +    + SRS SR   +R  R + +  + G   ST++ T
Sbjct: 126 SRSRSRSRSRSRSRSYSRSRSGSRRSSRRRSRRRSSLKARGRRASTAKKT 175


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 587 PPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLR 459
           PP+  +R+ +  + +RP R Q+ SP +G    +  + C+C  R
Sbjct: 187 PPVVVTRAPAIIENERPWRGQVCSPQSG---CSGGAACICGAR 226


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 558 PYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 457
           P+P     P P+ IP   P+P  + K +P H  K
Sbjct: 194 PFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPK 227



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 558 PYPVEKAVPFPVNIPVDRPYPVHIEKHVP 472
           P P+ K +PFP  +P  +P P  + K  P
Sbjct: 238 PMPIPKPMPFPKPMPKPKPKPKPMPKPKP 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,786,587
Number of Sequences: 27780
Number of extensions: 219133
Number of successful extensions: 871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)