Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_E23
(988 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97630-5|CAI21418.1| 564|Homo sapiens protein ( Human DNA seque... 95 4e-19
CR456436-1|CAG30322.1| 607|Homo sapiens dJ1014D13.1 protein. 95 4e-19
BC029265-1|AAH29265.1| 564|Homo sapiens eukaryotic translation ... 95 4e-19
BC011448-1|AAH11448.2| 188|Homo sapiens EIF3S6IP protein protein. 95 4e-19
BC007510-1|AAH07510.1| 564|Homo sapiens eukaryotic translation ... 95 4e-19
BC001101-1|AAH01101.1| 564|Homo sapiens eukaryotic translation ... 95 4e-19
AL022311-2|CAI18865.1| 564|Homo sapiens protein ( Human DNA seq... 95 4e-19
AK222529-1|BAD96249.1| 564|Homo sapiens eukaryotic translation ... 95 4e-19
AK222496-1|BAD96216.1| 564|Homo sapiens eukaryotic translation ... 95 4e-19
AF109359-1|AAQ13507.1| 564|Homo sapiens MSTP005 protein. 95 4e-19
AK098457-1|BAC05310.1| 297|Homo sapiens protein ( Homo sapiens ... 91 4e-18
AY453840-1|AAR24087.1| 538|Homo sapiens atherin protein. 33 1.2
BC043258-1|AAH43258.2| 915|Homo sapiens FBXO11 protein protein. 33 1.6
AY827075-1|AAV87312.1| 927|Homo sapiens F-box protein 11 protein. 33 1.6
AF176706-1|AAF17611.1| 192|Homo sapiens F-box protein FBX11 pro... 33 1.6
AF174599-1|AAF04520.1| 197|Homo sapiens F-box protein Fbx11 pro... 33 1.6
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 32 2.8
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 32 2.8
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 32 2.8
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 32 2.8
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 32 2.8
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 32 2.8
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 32 2.8
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 32 2.8
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 32 2.8
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 32 2.8
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 32 2.8
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 32 2.8
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 32 2.8
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 32 2.8
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 32 2.8
L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen ... 31 6.5
BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alph... 31 6.5
BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for IM... 31 6.5
BC004412-1|AAH04412.1| 187|Homo sapiens Unknown (protein for IM... 31 6.5
AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha... 31 6.5
AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collage... 31 6.5
>Z97630-5|CAI21418.1| 564|Homo sapiens protein ( Human DNA sequence
from clone RP3-466N1 on chromosome 22q12-13. ).
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>CR456436-1|CAG30322.1| 607|Homo sapiens dJ1014D13.1 protein.
Length = 607
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 539 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 598
Query: 92 XL 87
L
Sbjct: 599 TL 600
>BC029265-1|AAH29265.1| 564|Homo sapiens eukaryotic translation
initiation factor 3, subunit E interacting protein
protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>BC011448-1|AAH11448.2| 188|Homo sapiens EIF3S6IP protein protein.
Length = 188
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 120 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 179
Query: 92 XL 87
L
Sbjct: 180 TL 181
>BC007510-1|AAH07510.1| 564|Homo sapiens eukaryotic translation
initiation factor 3, subunit 6 interacting protein
protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>BC001101-1|AAH01101.1| 564|Homo sapiens eukaryotic translation
initiation factor 3, subunit 6 interacting protein
protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>AL022311-2|CAI18865.1| 564|Homo sapiens protein ( Human DNA
sequence from clone RP5-1014D13 on chromosome
22q13.1-13.2. ).
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>AK222529-1|BAD96249.1| 564|Homo sapiens eukaryotic translation
initiation factor 3 subunit 6 interacting protein varian
protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>AK222496-1|BAD96216.1| 564|Homo sapiens eukaryotic translation
initiation factor 3 subunit 6 interacting protein varian
protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>AF109359-1|AAQ13507.1| 564|Homo sapiens MSTP005 protein.
Length = 564
Score = 95.1 bits (226), Expect = 4e-19
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYID DMIH ADTKVA RYG FFIR++ KFEELNR
Sbjct: 496 KMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNR 555
Query: 92 XL 87
L
Sbjct: 556 TL 557
>AK098457-1|BAC05310.1| 297|Homo sapiens protein ( Homo sapiens
cDNA FLJ25591 fis, clone JTH12226. ).
Length = 297
Score = 91.5 bits (217), Expect = 4e-18
Identities = 41/62 (66%), Positives = 49/62 (79%)
Frame = -3
Query: 272 K*RHVVWTKGPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNR 93
K +++VWT G S DG+FQS SE+DFYI+ DMIH ADTK A RYG FFIR++ KFEELNR
Sbjct: 229 KMKNLVWTSGISALDGEFQSASEVDFYINKDMIHIADTKAARRYGDFFIRQIHKFEELNR 288
Query: 92 XL 87
L
Sbjct: 289 TL 290
>AY453840-1|AAR24087.1| 538|Homo sapiens atherin protein.
Length = 538
Score = 33.5 bits (73), Expect = 1.2
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Frame = +1
Query: 664 PLXSPGPRXLYLPDRXPGXGXAXLXKAPXAXGXXXPXTXXQXTLGXPSXXXAXAWXRLXX 843
P P P P R P A AP + G P Q + A A
Sbjct: 133 PPPPPAPVAAAAPARAP-RAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVA 191
Query: 844 PXRXPXXRPXSTQXAQXXXQKPPPAPE-KXRQRXSPYPKXXPP 969
P P P A+ PPP P +Q+ P P+ PP
Sbjct: 192 PPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPP 234
>BC043258-1|AAH43258.2| 915|Homo sapiens FBXO11 protein protein.
Length = 915
Score = 33.1 bits (72), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 844 PXRXPXXRPXSTQXAQXXXQKPPPAPEKXRQRXSPYPKXXPP 969
P + P +P Q Q Q+PPP P++ +Q+ P P PP
Sbjct: 15 PPQQPPPQPPQQQPPQ---QQPPPPPQQQQQQQPPPPPPPPP 53
>AY827075-1|AAV87312.1| 927|Homo sapiens F-box protein 11 protein.
Length = 927
Score = 33.1 bits (72), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 844 PXRXPXXRPXSTQXAQXXXQKPPPAPEKXRQRXSPYPKXXPP 969
P + P +P Q Q Q+PPP P++ +Q+ P P PP
Sbjct: 27 PPQQPPPQPPQQQPPQ---QQPPPPPQQQQQQQPPPPPPPPP 65
>AF176706-1|AAF17611.1| 192|Homo sapiens F-box protein FBX11
protein.
Length = 192
Score = 33.1 bits (72), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 844 PXRXPXXRPXSTQXAQXXXQKPPPAPEKXRQRXSPYPKXXPP 969
P + P +P Q Q Q+PPP P++ +Q+ P P PP
Sbjct: 8 PPQQPPPQPPQQQPPQ---QQPPPPPQQQQQQQPPPPPPPPP 46
>AF174599-1|AAF04520.1| 197|Homo sapiens F-box protein Fbx11
protein.
Length = 197
Score = 33.1 bits (72), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 844 PXRXPXXRPXSTQXAQXXXQKPPPAPEKXRQRXSPYPKXXPP 969
P + P +P Q Q Q+PPP P++ +Q+ P P PP
Sbjct: 12 PPQQPPPQPPQQQPPQ---QQPPPPPQQQQQQQPPPPPPPPP 50
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPTLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 36 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 93
Query: 840 XPXP 851
P P
Sbjct: 94 LPPP 97
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 87 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 144
Query: 840 XPXP 851
P P
Sbjct: 145 LPPP 148
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 660 TPSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPX 839
+P+ LP P SP PP G G P P P G P S + SP
Sbjct: 127 SPNPLPQGVPPPSPPGPPLPPSTAPSLGG--SGAPPPPPMPPPPLGSPFPVISSSMGSPG 184
Query: 840 XPXP 851
P P
Sbjct: 185 LPPP 188
>L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 561 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 602
>BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alpha 3
protein.
Length = 684
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 561 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 602
>BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for
IMAGE:3139559) protein.
Length = 561
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 438 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 479
>BC004412-1|AAH04412.1| 187|Homo sapiens Unknown (protein for
IMAGE:3640176) protein.
Length = 187
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 64 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 105
>AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha 3
protein.
Length = 684
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 561 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 602
>AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -1
Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
P G P G P G P RGP G P G+ GD+G
Sbjct: 561 PPGPPGPPGSIGHPGARGP-PGYRGPTGELGDPGPRGNQGDRG 602
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,940,161
Number of Sequences: 237096
Number of extensions: 1405587
Number of successful extensions: 5247
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5051
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13213860436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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