Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E23
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical p...    52   6e-07
U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical p...    52   6e-07
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    30   2.2  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    30   2.9  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    30   2.9  
U41553-3|AAA83293.1|  289|Caenorhabditis elegans Collagen protei...    30   2.9  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    30   2.9  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    30   2.9  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    29   3.9  
M25481-1|AAA27987.1|  283|Caenorhabditis elegans collagen protein.     29   3.9  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.7  
U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protei...    29   6.7  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        29   6.7  
AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    29   6.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical
           protein C17G10.9a protein.
          Length = 537

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = -3

Query: 245 GPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNRXLHHIKI 72
           GPS  D   +  +++DFY+D DMI+ ADTKVA   G  FIR + K +E+   L  + I
Sbjct: 478 GPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVGEHFIRHIQKLQEVQDVLKRLDI 534


>U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical
           protein C17G10.9b protein.
          Length = 535

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = -3

Query: 245 GPSGXDGKFQSGSELDFYIDXDMIHXADTKVAHRYGXFFIRKLXKFEELNRXLHHIKI 72
           GPS  D   +  +++DFY+D DMI+ ADTKVA   G  FIR + K +E+   L  + I
Sbjct: 476 GPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVGEHFIRHIQKLQEVQDVLKRLDI 532


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 802 GXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
           G P   G P   G  P   GP G    P   GD G+KG
Sbjct: 234 GLPGPKGPPGASGI-PGNDGPPGARGQPGLSGDSGEKG 270


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 690 PLSPXS-PPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPXXP 845
           P  P + PP       P GP      P P G   N G P    G   A P  P
Sbjct: 138 PCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 690 PLSPXS-PPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPXXP 845
           P  P + PP       P GP      P P G   N G P    G   A P  P
Sbjct: 138 PCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190


>U41553-3|AAA83293.1|  289|Caenorhabditis elegans Collagen protein
           19 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/55 (34%), Positives = 20/55 (36%)
 Frame = -1

Query: 826 RREPXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKGXXXQGXKEG 662
           R  P    G P  AG   G G    RRGP G    P   G  GD G      + G
Sbjct: 148 RPGPKGPSGLPGSAGPAGGNG----RRGPPGPVGGPGEQGPQGDAGRPGAAGRPG 198


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 690 PLSPXS-PPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPXXP 845
           P  P + PP       P GP      P P G   N G P    G   A P  P
Sbjct: 138 PCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 690 PLSPXS-PPXXGXGXXPXGPLRXGXXPXPHGXPANXGXPXXXXGSRLASPXXP 845
           P  P + PP       P GP      P P G   N G P    G   A P  P
Sbjct: 138 PCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = -1

Query: 844 GXXGXARREPXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
           G  G A  +       P  A  P G    P  +GP G    P  GG  G  G
Sbjct: 119 GVAGPAHHQQQECIKCPQGAPGPAGAPGNPGPQGPNGNPGAPAHGGGQGPPG 170


>M25481-1|AAA27987.1|  283|Caenorhabditis elegans collagen protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = -1

Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKGXXXQGXKEG 662
           P    G P  AG   G G    RRGP G    P   G  GD G      + G
Sbjct: 145 PKGPSGLPGSAGPAGGNG----RRGPPGPVGGPGEQGPQGDAGRPGAAGRPG 192


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = -1

Query: 844 GXXGXARREPXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKG 689
           G  G A        G P  AG P G    P R GP G    P   G  G  G
Sbjct: 230 GAPGPAGHPGSSGGGRPGPAG-PKGAPGQPGRPGPDGHPGQPGRPGQSGGSG 280


>U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protein
           174 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -1

Query: 817 PXXXXGXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKGXXXQGXKEG 662
           P    G P  AG P G    P  +G  G    P   GD G  G       EG
Sbjct: 238 PAGPAGAPGPAGPP-GTAGTPGSQGQPGKDGSPGDAGDNGTAGSPGHPGGEG 288


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 802 GXPXXAGXPXGXGXXPXRRGPXGXXPXPXXGGDXGDKGXXXQGXKEGV 659
           G P  AG P   G      GP G    P  GGD G +G   +   +G+
Sbjct: 25  GPPGKAGYPGAPGTDGYP-GPPGLSGMPGHGGDQGFQGAAGRTGNQGL 71


>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +3

Query: 663 PSXLPWXXXPLSPXSPPXXGXGXXPXGPLRXGXXPXPHGXPANXG 797
           P   P    P  P  PP       P GP        P+G P N G
Sbjct: 135 PPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKG 179


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 865 RPXSTQX-AQXXXQKPPPAPEKXRQRXSPYPKXXPPSXXXNP 987
           +P  T+  AQ   Q+ PP P+  +Q  SP P   PPS    P
Sbjct: 217 KPSGTKMPAQPPPQQHPPPPQP-QQIMSPMPPQAPPSQQATP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,926
Number of Sequences: 27780
Number of extensions: 185661
Number of successful extensions: 865
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)