Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E18
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   9.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 588 PSRGLG*SPEAGSVPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 728
           P  G G S  +GS   +  G  N     SR +  +   +  ++PPT+
Sbjct: 594 PINGSGASG-SGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 697 TSSAYIDLPPYTPTAHLRQWGGVVTTF 777
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 697 TSSAYIDLPPYTPTAHLRQWGGVVTTF 777
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 40  PSLRVPSFXCT 8
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 40  PSLRVPSFXCT 8
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,872
Number of Sequences: 438
Number of extensions: 5748
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)