Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E16
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   4.2  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.4  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   7.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284  DVRHPLYGIAYIVSLVGLHLTHH 216
            D++  + G+  +  L+G HLTHH
Sbjct: 1154 DIKIKIGGLGVMAELMGKHLTHH 1176


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 194 FYKTKKNNDALNAVLLMKRYRLFRTMDA*RLNKT 295
           FY+ +K  D + +  ++ RY  +R     R NKT
Sbjct: 496 FYQLEKEPDTVPSTFILHRYYTYRIFVEDRANKT 529


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 289 QNRLKWTDTIETNNNKINISNA 354
           QN+L W  T + +N  +NI NA
Sbjct: 384 QNQLLWPSTFDDDNFTLNIMNA 405


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 410 IKSNFLATCGEYKFINRDSLDILNLCPRFYLRAAK 514
           ++S     C ++ ++N D +DI++  P FY R  K
Sbjct: 13  LESQIDGVCPKF-YVNVDDIDIIHEPPEFYQRLKK 46


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 478  KFMPEILSPRCKSYVRGLRFICLTFASGSRRIVDI 582
            KF+ ++     + ++ GL+  CL F S S  +  I
Sbjct: 954  KFLEKVKQVTLQQFLEGLKIYCLPFFSSSNNLAVI 988


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 273 SIVRNSLYRFISRTAFNASLFFFV 202
           S V +++ R IS T F  S+FFFV
Sbjct: 54  SDVNSNISRNISNTFFKKSIFFFV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,348
Number of Sequences: 5004
Number of extensions: 51167
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)