Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E14
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.0  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   5.5  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   7.3  

>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 LNKS*VLILCFSNFVHFVSYINHNHLREYL 498
           LNKS +  LC +N++ F+  I   ++ +YL
Sbjct: 277 LNKSLITTLCLNNYLSFLMDIGFENIEQYL 306


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 655 RLSSGSGPTPASLLQSXEKI 714
           RLS+   PTP  +LQ  EKI
Sbjct: 74  RLSNSVAPTPGGILQETEKI 93


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = -3

Query: 566 NIFDTY----HCPIKVLYLIFSYFSTG 498
           N FD Y    HC I+V YL+ S F  G
Sbjct: 111 NFFDIYQTNWHCSIQVSYLVQSLFIVG 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,380
Number of Sequences: 5004
Number of extensions: 49332
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)