Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E07
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.79 
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    26   7.4  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   9.7  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   9.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   9.7  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 173 STRPPVSSPGDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEK 12
           S  PP+SSP    SP   L +     K++   GL K +   AP   PP    EK
Sbjct: 333 SPSPPLSSPASSASPSESLRNESLGIKSAKSLGLNKDD---APVEGPPVSHLEK 383


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
 Frame = -2

Query: 194 PXXXQHTSTRPPVSSPGDY----CSPHARLVSSKAQDKNSSHPGLP 69
           P    H ST+  VS   DY      PH    S  A+   +S P  P
Sbjct: 332 PALQNHASTQNVVSKRSDYEKPFAEPHLNSASDSAEPNQNSLPNPP 377


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 158 VSSPGDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPY--RAYEKKK 6
           + +P D C    R    +A  K ++H G       F P N+  Y  R Y + +
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 121 VLYLPRLKIRIRHIQAYPKESQISHLIIILHTEPTKKKK 5
           ++ + R+    RH++ YPK    S  ++ +  +P K  K
Sbjct: 223 LIQISRVSDLQRHLREYPKNCAFSRSVLEIFPDPGKTSK 261


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 167 RPPVSSPGDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPY 27
           +P      DY S  ++ + ++    N  H  +P+  PN     YPPY
Sbjct: 12  KPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPY 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,540
Number of Sequences: 5004
Number of extensions: 17814
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)