Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E06
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    29   1.1  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   4.4  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   7.7  

>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 351 QDREVFHRDEGAEGDDHDRHVEVRLCRRAWDHPYRYAWDHPYRHVWD 491
           ++++ F  D+ +E +D  ++  V++  R  D    Y W+  Y+  WD
Sbjct: 3   ENQKSFDSDK-SESEDEQKNGRVKVRSRKTDDNEGYTWEGEYQRSWD 48


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 484  SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSITFIS 603
            +GT++  I SGS+P  ++       SGTV +V P + T  S
Sbjct: 1050 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTS 1090



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GT++  I SGS+P  ++       SGTV VV P + T
Sbjct: 805 AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGT 842



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484  SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
            +GT++  I SGS+P  ++       SGTV VV P + T
Sbjct: 910  AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGT 947



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484  SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
            +GT++  I SGS+P  ++       SGTV VV P + T
Sbjct: 980  AGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGT 1017



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSITFISAGRISVSLS 630
           +GTI+  I SGSV   ++   S   SGTV VV P + T ++   IS S+S
Sbjct: 735 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT-VTETVISGSVS 783



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GTI+  I SGSV   ++   S   SGTV VV P + T
Sbjct: 210 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT 247



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GTI+  I SGSV   ++   S   SGTV VV P + T
Sbjct: 560 AGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT 597



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GT++  I SGSV   ++   S   SGTV VV P + T
Sbjct: 350 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT 387



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GT++  I SGSV   ++   S   SGTV VV P + T
Sbjct: 595 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT 632



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 SGTIS-VIASGSVPVIASRTVSIIASGTVSVVTPRSIT 594
           +GT++  I SGSV   ++   S   SGTV VV P + T
Sbjct: 630 AGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGT 667


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 237 GLFCVCIWLVHVMRCNFIVCIN*MKKKINAALL 335
           GL  +C+++VH + C  ++C    +  +NA  L
Sbjct: 477 GLVRICLFIVHYLSCEKVLCEKLNRNCMNAQSL 509


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 289 MKLHLITCTSQMQTQKSPIERKLNLISND*LTQSQYCENEAYFIKSRIQ 143
           ++ H+IT + +    +S I+  LNL++ D L++ +   NE   +  +IQ
Sbjct: 82  LRNHIITLSKRSVNMESRIDDMLNLLNYD-LSEKRETSNEIPSLVQQIQ 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,797
Number of Sequences: 5004
Number of extensions: 46751
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)