Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_E04
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 320 1e-88
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 315 4e-87
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 129 4e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 1e-12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.049
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.46
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 5.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.6
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.5
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 7.5
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 7.5
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 320 bits (787), Expect = 1e-88
Identities = 140/177 (79%), Positives = 159/177 (89%)
Frame = -2
Query: 662 PXIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
P IHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Query: 482 VVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 303
V+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT
Sbjct: 327 VIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTT 386
Query: 302 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 132
+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 387 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 56.4 bits (130), Expect = 5e-09
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = -1
Query: 759 IGQIVSSITAFXKFDGALNVDLTEFQTNLVPYPXYPLP 646
I Q+VSSITA +F G+LNVDL EFQTNLVPYP P
Sbjct: 235 IAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFP 272
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 315 bits (774), Expect = 4e-87
Identities = 139/177 (78%), Positives = 156/177 (88%)
Frame = -2
Query: 662 PXIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
P IHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Query: 482 VVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 303
V+P+DV AA+ IK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT
Sbjct: 323 VIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTT 382
Query: 302 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 132
+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 383 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = -1
Query: 786 PNXHQPXXXIGQIVSSITAFXKFDGALNVDLTEFQTNLVPYPXYPLP 646
P+ I Q+VSSITA +F+G+LNVDL EFQTNLVPYP P
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFP 268
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 129 bits (312), Expect = 4e-31
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Frame = -2
Query: 662 PXIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
P +HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGK 320
Query: 482 VVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 303
V K+V+ I +++TK + FV+W P + PP DL + + + N+T
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNST 372
Query: 302 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 135
+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 373 SIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 32.3 bits (70), Expect = 0.086
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 759 IGQIVSSITAFXKFDGALNVDLTEFQTNLVPYP 661
+ +++ +T +F G LN DL + N+VP+P
Sbjct: 229 VSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFP 261
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.5 bits (160), Expect = 1e-12
Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 7/179 (3%)
Frame = -2
Query: 665 TPXIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCM 498
+P HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 263 SPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILD 322
Query: 497 LYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 318
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 317 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 150
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 786 PNXHQPXXXIGQIVSSITAFXKFDGALNVDLTEFQTNLVPYP 661
P HQ + ++S+ T ++ G +N DL +L+P P
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSP 264
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.049
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -3
Query: 634 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 461
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 460 RPSLTSKPSVLSNSSTGVQPVSRSVSTTSHP 368
+TS P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 29.5 bits (63), Expect = 0.61
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = -3
Query: 661 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 482
PV+T++ + + P ++ + + T ++S P +TPV +S + T VT
Sbjct: 526 PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY---TSTPVTSSNYTISSSTPVT 582
Query: 481 SYPRM*TRPSLTSKPSVLSNSSTGVQPVSRSVSTT 377
S P T + T+ SVL S+ P S S S+T
Sbjct: 583 STPV--TTTNCTTSTSVLYTSTPITSPNSTSSSST 615
Score = 29.1 bits (62), Expect = 0.80
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = -3
Query: 667 LPPVSTSHWSRTRQSSLPRRPTMNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVC 497
+PP S+S T + S P +P + T+ ++ + +TPV ++
Sbjct: 413 VPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTN 472
Query: 496 CTVVTSYPRM*TRPSLTSKPSVLSNSSTGVQPVSRSVSTTS 374
CT TS P T +TS P +N +T S TS
Sbjct: 473 CTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 27.9 bits (59), Expect = 1.8
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = -3
Query: 661 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 482
PV++S++ T SS P T P + T+ ++ + +TPV ++ CT T
Sbjct: 508 PVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTST 559
Query: 481 SYPRM*TRPSLTSKPSVLSNSSTGVQPVSRSVSTTS 374
S P T P +S ++ S++ PV+ + TTS
Sbjct: 560 SVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 26.6 bits (56), Expect = 4.3
Identities = 44/153 (28%), Positives = 55/153 (35%), Gaps = 8/153 (5%)
Frame = -3
Query: 655 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 476
STS S T SS P T S T S PPT ++ + + T TS
Sbjct: 94 STSSASTTGSSSSPLPSTSTS-----CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148
Query: 475 PRM*TRPSLT---SKP----SVLSNSSTGVQPVSRSVS-TTSHPPWCPEATWPRFNVXXX 320
P T S T S P S +ST + P S S +T P P + ++
Sbjct: 149 PIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208
Query: 319 XXXXXXXXPKLGLALTTSSTSCTPSVLSCTGTS 221
L T+STSCT S TG S
Sbjct: 209 PTSTSSTDTNSS-PLPTTSTSCTTSTSIPTGGS 240
Score = 26.2 bits (55), Expect = 5.6
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = -3
Query: 661 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 482
P++T++ T +S+P T + +P + T+ ++ + +TPV +S + T VT
Sbjct: 467 PLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVT 523
Query: 481 SYPRM*TRPSLTSKPSVLSNSSTGVQ-PVSRSVSTTS 374
S P T + T+ SVL S+ P++ + TTS
Sbjct: 524 STPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.46
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -3
Query: 655 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 476
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 475 PRM*TRPSLTSKPSVLSNSST 413
+ SL+SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 578 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 453
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 450 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 593
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 286 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 113
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 112 EPKSTK 95
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/89 (25%), Positives = 32/89 (35%)
Frame = -3
Query: 622 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLTS 443
S+P+ P P S + P P + S VV P + RP++
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 442 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 661 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 545
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 705 NVDLTEFQTNLVPYPXYPLPTGHVRASHLCREGLP 601
++ L QTNL P + P H SHL + +P
Sbjct: 252 SIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVP 286
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 628 QSSLPRRPTMNSFPSPRSQTHASSPPTR 545
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = -3
Query: 661 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 482
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 481 SYPRM*TRPSLTSKPSVLSNSSTG 410
+ P + P +S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 473 WVRRHHGTAYSKPCTCHDGG 532
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 463 TRPSLTSKPSVLSNSSTGVQPVSRSVS 383
+RP+LT PS+ S S V S+S+S
Sbjct: 219 SRPTLTRTPSITSRSVNSVTERSKSLS 245
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 535 ATPVMASTWLAVCCTVVTSYPRM*TRPSLTSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356
+TP ++S A VV+S T + +S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -3
Query: 670 ALPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCT 491
+LP S ++R SLP NS P+P+ + +S P R + V ++ + +
Sbjct: 330 SLPASMPSSQPQSRSESLPLTHP-NSEPNPKLDSQPNSSPVRRPSLIKVKTASTSVLPTS 388
Query: 490 VVTSYPRM*TRP 455
++ P + RP
Sbjct: 389 ILQRPPSIVPRP 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,324
Number of Sequences: 5004
Number of extensions: 65692
Number of successful extensions: 241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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