Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E02
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   323   8e-89
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  323 bits (794), Expect = 8e-89
 Identities = 158/215 (73%), Positives = 173/215 (80%)
 Frame = -2

Query: 724 RXRKTQKEWVPVTKXGRXVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMP 545
           R  + + EW PVTK GR V+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI P
Sbjct: 49  RGGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISP 107

Query: 544 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 365
           VQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWG
Sbjct: 108 VQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWG 167

Query: 364 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTG 185
           NKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST 
Sbjct: 168 NKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTA 227

Query: 184 TLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 80
           TLGNF             YLTPDLW++  L KSPY
Sbjct: 228 TLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 319 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 188
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 319 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 188
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 227 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 331
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 494 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 580
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 494 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 580
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,283
Number of Sequences: 27780
Number of extensions: 403716
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)