Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D23
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.3  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    27   4.4  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    27   4.4  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 417  RAAEPDVYYERGHERFYEDEAHYREEPREYKA 322
            R A+    +ER H+R  ++E  Y E+ RE KA
Sbjct: 1065 RKAKKAAEHERYHKRMQKEEQAYIEKKREEKA 1096


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 507 ILERARTAMEG-SYSYEDHYAPPEPPMR 427
           ++E+   ++EG S+ Y  +Y P EPPM+
Sbjct: 133 LMEKDLGSLEGTSFRYTANYRPREPPMK 160


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 480 EGSYSYEDHYAPPEPPMRGGGRAAEPDVYYERGHERFYEDEA-HYREEPREYKASS 316
           E +Y Y+D    P P    G +   P V     +E+  E  A +  ++  EY+A S
Sbjct: 435 ESAYYYKDSTDEPPPITTSGVQYTSPTVSDSASNEKEQEHRAQNEAQKEEEYRAES 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,121
Number of Sequences: 5004
Number of extensions: 26365
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)