Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D23
(840 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear r... 32 2.3
BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein pr... 32 2.3
BX538163-1|CAD98043.1| 243|Homo sapiens hypothetical protein pr... 32 2.3
BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein. 32 2.3
BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein. 32 2.3
AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear r... 32 2.3
AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear r... 32 2.3
AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear r... 32 2.3
>DQ351905-1|ABC73063.1| 595|Homo sapiens heterogeneous nuclear
ribonucleoprotein-R2 protein.
Length = 595
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 382 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 436
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 437 YGYDYHDYRGGYED 450
>BX640912-1|CAE45953.1| 613|Homo sapiens hypothetical protein
protein.
Length = 613
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 400 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 454
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 455 YGYDYHDYRGGYED 468
>BX538163-1|CAD98043.1| 243|Homo sapiens hypothetical protein
protein.
Length = 243
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 30 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 84
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 85 YGYDYHDYRGGYED 98
>BC110389-1|AAI10390.1| 607|Homo sapiens HNRPR protein protein.
Length = 607
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 394 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 448
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 449 YGYDYHDYRGGYED 462
>BC001449-1|AAH01449.1| 636|Homo sapiens HNRPR protein protein.
Length = 636
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 423 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 477
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 478 YGYDYHDYRGGYED 491
>AL109936-4|CAI19027.1| 636|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 636
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 423 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 477
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 478 YGYDYHDYRGGYED 491
>AL109936-3|CAI19026.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 420 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 474
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 475 YGYDYHDYRGGYED 488
>AF000364-1|AAC39540.1| 633|Homo sapiens heterogeneous nuclear
ribonucleoprotein R protein.
Length = 633
Score = 32.3 bits (70), Expect = 2.3
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = -1
Query: 501 ERARTAMEGSYSYEDHYAPPEPPM--------RGGGRA--AEPDVYYERGHERFYEDEAH 352
+ AR A S +YED+Y P P M RGGGR P YY G+E +Y+D +
Sbjct: 420 QAARQASR-STAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY--GYEDYYDD--Y 474
Query: 351 YREEPREYKASSRD 310
Y + +Y+ D
Sbjct: 475 YGYDYHDYRGGYED 488
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,577,116
Number of Sequences: 237096
Number of extensions: 1119549
Number of successful extensions: 2952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2948
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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