Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D21
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   3.1  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   7.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   7.1  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 27/91 (29%), Positives = 44/91 (48%)
 Frame = +3

Query: 282 VHDRLIDLSIFNYGSILVTFIARTFIAGHKIPASQFNFA*QQLIDNVPRRLQVSPISRCD 461
           V++ L DLS    G++L       F  G  I    F+   +Q+   +P+R+QVSP     
Sbjct: 427 VYEPLKDLSEC-IGNVLADGEPVQFSVGTNIHNMNFSAIDKQIRSIIPQRVQVSPAVLAK 485

Query: 462 NHQVSVGPAHILRAELHIPRHRVSDRGTPTN 554
           N+ ++ G    L A++      +S+R T TN
Sbjct: 486 NY-LAPGQTTAL-AQMRAVFIYISERITFTN 514


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 279 LVHDRLIDLSIFNYGSI 329
           ++HD  +DLSI++YG +
Sbjct: 245 IIHDAYVDLSIWDYGVV 261


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 66  QNRIYMTEGS---NTFSHSCVIRRKHSTSSD*TMTISVPPSEQLSRLIIRQTSNMPPXIL 236
           Q+ +Y++  S   + FS +    ++  TSS  +++ SVP S  LS      TSN P   L
Sbjct: 181 QSSLYVSPSSQPLDRFSPASFPSKETLTSS--SLSSSVPRSVSLSNFADSNTSNYPESSL 238

Query: 237 LFLWKYTVNG 266
           L   K   NG
Sbjct: 239 LPAAKVGNNG 248


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 353 IYRRS*NSSKSVQLCLATTNRQRPKTSTS 439
           +YRR+  SS S    ++T++  +P TS+S
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,179
Number of Sequences: 5004
Number of extensions: 61114
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)