Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D21
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536...    29   3.2  
03_02_0163 - 6056959-6058989                                           29   4.3  
01_01_0540 + 3957622-3960903                                           28   7.4  
05_01_0591 + 5308735-5309178,5309265-5310314                           28   9.8  
01_01_0896 + 7060431-7061390,7063562-7064191                           28   9.8  

>01_06_0447 +
           29452194-29452361,29453232-29453317,29453403-29453610,
           29454252-29454381,29454561-29454745,29454858-29454989,
           29455747-29455851
          Length = 337

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 560 DLIRRSTAVTNTMPGDMKLGSEDVRGSYADLMIV-TTRYWRYL 435
           D++RR   V +    D K G   +RG++  LMI+  T+ WR L
Sbjct: 252 DVVRRQMQVQSQQYHD-KFGGPQIRGTFQGLMIIKQTQGWRQL 293


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 171 PPSEQLSRLIIRQTSNMPPXILLFLWKYTVN 263
           PPSEQ + +++  TS  P  ++L LW +  N
Sbjct: 112 PPSEQDAVIVLNTTSARPAAVVLALWWFLRN 142


>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -1

Query: 662 KLEWILNCKKKISVIV*IYFIHNVIERQAWRESYDLIRRSTAVTNTMPGDMKL 504
           +L W ++C  KI ++        ++++  WR    L+ RS      +P D K+
Sbjct: 835 QLYWTIDCVVKILILAAFLLTLRLVQK-VWRSRIRLLTRSPLEPGRVPSDKKV 886


>05_01_0591 + 5308735-5309178,5309265-5310314
          Length = 497

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 392 VELTCWNFMTGDKCASDKC-DENGAVIKNAQVNKSI 288
           V++ CW +M  ++CA D    E+G    + +++ SI
Sbjct: 237 VDVVCWRWMQQERCAGDDTRSEHGVAAYSRRLSASI 272


>01_01_0896 + 7060431-7061390,7063562-7064191
          Length = 529

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 560 DLIRRSTAVTNTMPGDMKLGSEDVRGSYADL 468
           DL+   TA +NT+      G E  RG Y D+
Sbjct: 180 DLVEHLTAYSNTVVSRAVFGDESARGLYGDV 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,261
Number of Sequences: 37544
Number of extensions: 367681
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)