Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D21
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    29   5.1  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    29   5.1  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    29   5.1  
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 491 VRGSYADLMIVTTRYWRYL*TSWDVVD*LLLSKVELTCWNFMTGDKCASDK 339
           +R +Y  +++    ++  L  + +  D LL+S + LT W    G +CAS K
Sbjct: 420 LRKTYESILLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASLK 470


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 491 VRGSYADLMIVTTRYWRYL*TSWDVVD*LLLSKVELTCWNFMTGDKCASDK 339
           +R +Y  +++    ++  L  + +  D LL+S + LT W    G +CAS K
Sbjct: 420 LRKTYESILLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASLK 470


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 491 VRGSYADLMIVTTRYWRYL*TSWDVVD*LLLSKVELTCWNFMTGDKCASDK 339
           +R +Y  +++    ++  L  + +  D LL+S + LT W    G +CAS K
Sbjct: 420 LRKTYESILLPLESFYHTLAFNSEFCDDLLMSNLRLTNWYRKQGCRCASLK 470


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 525 RVSDRGTPTN*IIAFPPSLPFYNIVYKINS-DDD*YLFFTI*NPFEFPVHLNLIHMLLLV 701
           RV D GT    II F    PFY  V+KIN   D   L F I N F   V L +I  +++V
Sbjct: 26  RVIDYGT----IIIFFAIFPFYVYVHKINDVKDREALVFPITNHFYKTVVLMIIGYVIVV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,617
Number of Sequences: 27780
Number of extensions: 343841
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)