Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D19
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.99 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   5.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.0  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.3  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 195 AISKIRSTIF*NVYFFYLCHVC 130
           A+  I S IF N +FFYLC  C
Sbjct: 27  ALVIILSVIFINFFFFYLCRCC 48


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 709 SPVXCPSTGPTPVHVPAPYPRREAS 635
           SPV  P+  P    VP P P+R++S
Sbjct: 47  SPVTAPAAQPVESSVPLPLPKRKSS 71


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 778  PYPRXS*GAPYRSPYPRCEATSVSPVXCPSTGPTPVHVPAPYP 650
            P P+ S GAP   P     ++ +  +  PS  P PV  P+  P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP-PVPAPSGIP 1092


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 757 GAPYRSPYPRCEATSVSPVXCPSTGPTPVHVPAPYPRREA 638
           G P+    P   + S + V   ST   P++  AP  RRE+
Sbjct: 205 GTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRES 244


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 255 TTTVPHSGNETGPTTVYVETPYP 277



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 333 TTTVPHSGNETGPTTVYVETPYP 355



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 411 TTTVPHSGNETGPTTVYVETPYP 433



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 489 TTTVPHSGNETGPTTVYVETPYP 511



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 567 TTTVPHSGNETGPTTVYVETPYP 589



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 718 TSVSPVXCPSTGPTPVHVPAPYP 650
           T+  P     TGPT V+V  PYP
Sbjct: 645 TTTVPHSGNETGPTTVYVETPYP 667


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 221 MNISPSTAGPSAKFDPLSFKMYIFFIYVMYAER 123
           + +SPS   P  +F P S +M +   Y + A+R
Sbjct: 24  IEVSPSMLDPVDEFTPSSLQMALICAYQLAAQR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,192
Number of Sequences: 5004
Number of extensions: 39646
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)