Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D18
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.6  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   7.9  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   7.9  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 310 STFRFSQYNQIFSDI*YCYF-LFYRFETIATIAVFSTLSFKSSLLVVINGNL*IIKTLMS 134
           STF    + Q F DI YCYF + +R    AT    ++   K +L   +  N    K L+ 
Sbjct: 195 STFPIDGFEQQFFDITYCYFPITFRAPPDATNLAITSDDLKIALRETLVANDAFSKLLLP 254

Query: 133 KL 128
            L
Sbjct: 255 AL 256


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 220 LLLSFQIDKTKNNNIIYH*RFDCIVRI*KSKSYGRWGRLWP 342
           L+    +  T     +YH  F  + R     S+G WG LWP
Sbjct: 100 LICGILVATTGRPGAVYHISFPVLSR----SSFGTWGSLWP 136


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 596 NEYLYRPVNQDEV--DKKPNVSLKYSDRYYPAEV 501
           NEY + PV  D+V   +K ++ L  SDR+ P +V
Sbjct: 520 NEYAFIPVFPDQVKAGEKISIELWDSDRFSPDDV 553


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 209 EHSDCCYRFKSIKQKITISYITKDLIVL*ESKSRSR 316
           E +  CY F  +    T++Y+ ++++ L   KSR +
Sbjct: 421 ESAGACYTFMHLLYHTTLTYLLRNVLDLFPEKSRQK 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,759
Number of Sequences: 5004
Number of extensions: 35708
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)