Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D18
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,...    30   2.3  
At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containi...    29   5.2  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    28   9.1  
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    28   9.1  

>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
           putative similar to CAAT-box DNA binding protein subunit
           B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
           Pfam PF00808 : Histone-like transcription factor
           (CBF/NF-Y) and archaeal histone
          Length = 228

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 366 GGGGEHSSGPETSPASIRLRLLD 298
           GGGG H SG + SP S+ +R  D
Sbjct: 9   GGGGSHESGGDQSPRSLNVREQD 31


>At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 534

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
 Frame = -3

Query: 761 YAXEELNCEVSNXXQDSVKXXWICPDGFTFHQVHLXCM--------PPTHGNICQKSSKY 606
           Y    L C+V    +  ++  +  PD FTF  +   C            HG++C+   ++
Sbjct: 83  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142

Query: 605 HFVNE 591
           H V E
Sbjct: 143 HVVTE 147


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 339 PETSPASIRLRLLDSHNTIKSLVIYDIVIFCFID 238
           P+T P  +R  L ++  T+K L I D+V F F+D
Sbjct: 423 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 456


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 339 PETSPASIRLRLLDSHNTIKSLVIYDIVIFCFID 238
           P+T P  +R  L ++  T+K L I D+V F F+D
Sbjct: 427 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,413
Number of Sequences: 28952
Number of extensions: 183715
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)