Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D17
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 40 6e-04
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.4
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 2.4
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 27 3.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 4.2
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 4.2
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 26 5.6
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 9.7
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -2
Query: 802 DEEVDIIKIDATANDXPNHXSTFPASPQFSGA*GQLQEPQRYNGGRALEDFIKYVSEQAT 623
D V + KIDAT ND S FP F P RY G R LED ++ + A+
Sbjct: 405 DSNVVVAKIDATENDISVSISGFPTIMFFKA--NDKVNPVRYEGDRTLEDLSAFIDKHAS 462
Query: 622 SE 617
E
Sbjct: 463 FE 464
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 798 KKLTSLRSMQLQMTXXITIRRFRLPHNFLEPKDSSKNLRDIMEDVL*RTSSSMFLNKPQA 619
+K+TSLRS L + + + + E + SSK L +ED + S++ K
Sbjct: 1003 EKITSLRSELLDLNKRVEVLKE-------EKESSSKELAKQLEDAVREKDSALSFKKDYE 1055
Query: 618 NLRAGTERV 592
+R+ +RV
Sbjct: 1056 KIRSDADRV 1064
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 390 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 506
E + +C + +F FP + +N +V+ HC SH P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 344 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 460
+V + N N++ TT+S+ + IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = -2
Query: 802 DEEVDIIKIDAT--ANDXPNHX-STFPASPQFSGA*GQLQEPQRYNGGRALEDFIKYVSE 632
+ V+I+KI+A A+ H ++FP F +P+ Y G R+LE I+Y+++
Sbjct: 190 EPNVEIVKINADVFADIGRLHEVASFPTIKFFPK--DDKDKPELYEGDRSLESLIEYINK 247
Query: 631 QATSE 617
++ ++
Sbjct: 248 KSGTQ 252
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 426 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 545
IS +TD INS + F CF H + PS K T +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 792 LTSLRSMQLQMTXXITIRRFRLPHNFLEP-KDSSKNLRDI-MEDVL*RTSSSMFLNKPQA 619
L SLR +Q + F+ +FL+P + +N +D+ ++D++ R M + Q
Sbjct: 1239 LDSLRQFSMQFLEIEELSHFKFQKDFLQPFSHAMENSQDLKIKDLVLRCIDQMIKARYQ- 1297
Query: 618 NLRAG 604
N+R+G
Sbjct: 1298 NIRSG 1302
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 121 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 207
Q+M ++ HP + Y YTT DN+ + Y N+
Sbjct: 75 QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +2
Query: 98 ILIINGHLNLCN*FITHKSRFISTQHMTTLAIFIKMFIISLPKGLKC--YHTFVPRYTES 271
+ I+N L++C+ + + I K ISLP + YH Y
Sbjct: 108 VRIVNERLDICD----KAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNAD 163
Query: 272 NER*NCVYASVLF 310
E+ CV ASV F
Sbjct: 164 GEQLTCVSASVSF 176
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 697 AVLRLQKIVGKPETSNXDXXSHLQLHRS 780
A+LRLQ I KP+ + S LQ+H S
Sbjct: 874 AILRLQNIAAKPKDDSLS-PSELQVHDS 900
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,622
Number of Sequences: 5004
Number of extensions: 70503
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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