Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D17
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0810 + 11429776-11429985,11430003-11430935 34 0.16
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 31 1.1
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 31 1.4
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 29 3.3
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 29 3.3
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 29 4.4
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 28 7.7
03_02_0811 + 11437654-11438958 28 7.7
03_02_0809 + 11419318-11420493 28 7.7
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 7.7
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 509 TQIHTQIFHGKF*ITTARLQLFLSLFGVTLSVPALKFACGLFRN 640
T ++T ++ K +TT +++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 802 DEEVDIIKIDATANDXPNHXST--FPASPQFSGA*GQLQEPQRYNGGRALEDFIKYVSE 632
D+++ I K+D T ND P + +P +S + G L Y+G R E+ I +++E
Sbjct: 414 DQDIVIAKMDGTVNDIPTDFTVEGYPTIYFYSSS-GNLLS---YDGARTAEEIISFINE 468
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 682 RYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 569
+ NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 326 KINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = -2
Query: 679 YNGGRALEDFIKYVSEQ 629
Y+GGR L+DF+K+++E+
Sbjct: 239 YDGGRELDDFVKFINEK 255
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = -2
Query: 679 YNGGRALEDFIKYVSEQ 629
Y+GGR L+DF+K+++E+
Sbjct: 210 YDGGRELDDFVKFINEK 226
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 802 DEEVDIIKIDATANDXPNHXST--FPASPQFSGA*GQLQEPQRYNGGRALEDFIKYVSEQ 629
DE+V I K+D TAND P+ + +P S F + G L Y+ GR E+ I ++++
Sbjct: 420 DEDVVIAKMDGTANDVPSDFAVEGYP-SMYFYSSGGNLLP---YD-GRTAEEIIDFITKN 474
Query: 628 ATS 620
S
Sbjct: 475 KGS 477
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = -2
Query: 802 DEEVDIIKIDATANDXPNHXST--FPASPQFSGA*GQLQEPQRYNGGRALEDFIKYV--S 635
D++V I K+DATAND P+ +P + F G++ Y GR ++ + ++ +
Sbjct: 434 DKDVVIAKMDATANDVPSEFDVQGYP-TLYFVTPSGKMVP---YESGRTADEIVDFIKKN 489
Query: 634 EQATSELKGWDRKGNAKQGKEEL 566
++ + K A+ K+EL
Sbjct: 490 KETAGQAKEKAESAPAEPLKDEL 512
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 640
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 160 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 203
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 640
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 113 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 156
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 323 KVILDLLSVNMMVNECNITIARGTTM----SLYPKNAFHICF--PLDRY 451
K++ L SV M +CNIT+ GT S ++AF P DRY
Sbjct: 485 KLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRY 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,135
Number of Sequences: 37544
Number of extensions: 398226
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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