Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D17
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 37   0.022
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 33   0.28 
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     30   2.6  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)               29   4.5  
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 29   6.0  

>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/75 (37%), Positives = 40/75 (53%)
 Frame = -2

Query: 802 DEEVDIIKIDATANDXPNHXSTFPASPQFSGA*GQLQEPQRYNGGRALEDFIKYVSEQAT 623
           D+ + I KIDATAND P+  +       +       + P +++GGR L+D IK+V E+AT
Sbjct: 573 DKNIVIAKIDATANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGRELKDLIKFVEEKAT 632

Query: 622 SELKGWDRKGNAKQG 578
             L     K  AK G
Sbjct: 633 VSLS----KEKAKDG 643


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -2

Query: 814 EKLKDE-EVDIIKIDATANDXPN-HXSTFPASPQFSGA*GQLQEPQRYNGGRALEDFIKY 641
           EK KD  ++ + K+D+TAN+       +FP    F     +  E   YNGGR L+DF+K+
Sbjct: 429 EKYKDHADIVVAKMDSTANEVEGVKVHSFPTIKYFP----KEGEAVDYNGGRTLDDFVKF 484

Query: 640 V 638
           +
Sbjct: 485 L 485


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 688 PQRYNGGRALEDFIKYVSEQ 629
           P+ YNGGR + DFIK++ E+
Sbjct: 109 PEEYNGGRDINDFIKFIEEK 128


>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +2

Query: 218 LPKGLKCYHTFV---PRYTESNER*NCVYASVLFCKSSKVILD-LLSVNMMVNECNITIA 385
           LPK L CY T+V   P    S+++ + VY   +  + S + +  LL+ +  V +  IT+ 
Sbjct: 35  LPKQLHCYFTWVIHGPMDFASDKKLSEVYKRAVILRQSTISMTALLTASFSVEDLPITVM 94

Query: 386 RGTTMSLYPKNAFHICFPLDRYN 454
                 L  +N  H  FP++  N
Sbjct: 95  LKDFAWLLVRNLTH--FPVEDAN 115


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 501 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSRARPPL 677
           HP +KY  R   +S   +   Y    PC+  P     LS  V+ S T  LM  S ++   
Sbjct: 391 HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 447

Query: 678 YL*GSWSCP 704
           Y+  S S P
Sbjct: 448 YMQVSSSYP 456


>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 501 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSRARPPL 677
           HP +KY  R   +S   +   Y    PC+  P     LS  V+ S T  LM  S ++   
Sbjct: 74  HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 130

Query: 678 YL*GSWSCP 704
           Y+  S S P
Sbjct: 131 YMQVSSSYP 139


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -2

Query: 814 EKLKD-EEVDIIKIDATANDXPNHXS 740
           EKL+D +++ I K+DATAND P + S
Sbjct: 907 EKLQDVKDIVIAKMDATANDAPPNFS 932


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,933,396
Number of Sequences: 59808
Number of extensions: 503518
Number of successful extensions: 1136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)