Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D17
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21750.1 68414.m02722 protein disulfide isomerase, putative s...    36   0.032
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s...    35   0.074
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila...    30   1.6  
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR...    28   8.5  
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR...    28   8.5  
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049...    28   8.5  
At1g61430.1 68414.m06922 S-locus protein kinase, putative simila...    28   8.5  

>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 501

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -2

Query: 802 DEEVDIIKIDATANDXPNHXSTFPASP--QFSGA*GQLQEPQRYNGGRALEDFIKYVSEQ 629
           D  V I K+DATAND P         P   F  A G +     Y G R  EDFI +V + 
Sbjct: 424 DSSVVIAKLDATANDFPKDTFDVKGFPTIYFKSASGNVVV---YEGDRTKEDFISFVDKN 480

Query: 628 ATSELKGWDRKGNAKQGKEEL 566
             +  +    +   ++ K+EL
Sbjct: 481 KDTVGEPKKEEETTEEVKDEL 501


>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
           similar to protein disulfide isomerase precursor
           GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
           PF00085 Thioredoxins
          Length = 508

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 802 DEEVDIIKIDATANDXPNHXSTFPASP--QFSGA*GQLQEPQRYNGGRALEDFIKYVSEQ 629
           D  V I K+DATAND P+        P   F  A G +     Y G R  EDFI +V + 
Sbjct: 422 DPSVIIAKLDATANDIPSDTFDVKGFPTIYFRSASGNVVV---YEGDRTKEDFINFVEKN 478

Query: 628 A 626
           +
Sbjct: 479 S 479


>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 802

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +2

Query: 209 IISLPKGLKCYHTFVPRYTESNER*N----CVYASVLFCKSS 322
           ++S+P   KC+  FVP+++E  +R N    CV  + L C+ +
Sbjct: 290 VMSIPPKCKCFKGFVPQFSEEWKRGNWTGGCVRRTELLCQGN 331


>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 814 EKLKDEEVDIIKIDATANDXPNHXSTFPASPQFSG 710
           +++  +E  ++   ATA   P+H  TF ++ +F+G
Sbjct: 88  QEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAG 122


>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 814 EKLKDEEVDIIKIDATANDXPNHXSTFPASPQFSG 710
           +++  +E  ++   ATA   P+H  TF ++ +F+G
Sbjct: 88  QEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAG 122


>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
           At5g34895, At2g02200
          Length = 671

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 694 QEPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEEL 566
           +E Q   G    E+ ++Y    +T  ++  +++ N KQG EE+
Sbjct: 386 EEKQEEEGKEEEEEKVEYRDHHSTCNVEETEKQENPKQGDEEM 428


>At1g61430.1 68414.m06922 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 806

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 209 IISLPKGLKCYHTFVPRYTESNER*N----CVYASVLFCKSS 322
           ++S+P   KC+  FVP++ +  ++ N    CV  + L C+ +
Sbjct: 294 VVSIPPKCKCFKGFVPKFAKEWKKGNWTSGCVRRTELHCQGN 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,682,713
Number of Sequences: 28952
Number of extensions: 348905
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)