Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D16
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    28   1.5  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   2.5  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   5.9  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 629 SXNXSTKXSHNIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPIFIP 489
           S   S   + N++PS +    H  N S+NP      N++ + P+FIP
Sbjct: 96  SARSSNSPAGNLEPSTNNAGVHMTNASMNP------NVNPSYPVFIP 136


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 254 ASISNSSRHSRGRPRTTHPPLGK 186
           AS SN++   R R + +HPPLG+
Sbjct: 276 ASSSNTAASFRNRQQISHPPLGR 298


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 121 QYILCTHVHQPTITQQTTIMKFFPSG 198
           +Y +C+     TIT++  + K FP G
Sbjct: 99  RYAICSQTSHNTITRKDIVQKAFPEG 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,905
Number of Sequences: 5004
Number of extensions: 43550
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)