Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D16
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79753-5|CAE17798.1|  170|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical p...    29   5.5  
Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    29   5.5  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    29   5.5  
AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin...    29   5.5  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    29   5.5  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    29   5.5  
AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative inte...    28   9.6  
AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arr...    28   9.6  

>Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical
           protein F20G2.6b protein.
          Length = 218

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -1

Query: 632 ISXNXSTKXSHNIKPSXSRNTNHNLNTSLNPSPG------INLNLSTNLPIFIPVY 483
           I+ N +    +N   + S N N+N N + NPSP       +  N S   P+++P Y
Sbjct: 96  IANNDTEISCNNFNSNSSFNRNNNSNNTSNPSPPSYYAEVMATNSSALYPVYVPPY 151


>Z79753-5|CAE17798.1|  170|Caenorhabditis elegans Hypothetical
           protein F20G2.6a protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -1

Query: 632 ISXNXSTKXSHNIKPSXSRNTNHNLNTSLNPSPG------INLNLSTNLPIFIPVY 483
           I+ N +    +N   + S N N+N N + NPSP       +  N S   P+++P Y
Sbjct: 48  IANNDTEISCNNFNSNSSFNRNNNSNNTSNPSPPSYYAEVMATNSSALYPVYVPPY 103


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 689 DSXIXSYTXXXXTQLHNRDISX-NXSTKXSHNIKPSXSRNTNHNLNTSLNPSPGINL 522
           +S I  +       +HNRD +    + + SH+  P+   N N+N N + N S   N+
Sbjct: 49  ESSIREWRKNENKLIHNRDAAAARLNAQSSHSSGPARLNNMNNNNNNNHNHSKNNNI 105


>Z92830-15|CAN86918.1|  366|Caenorhabditis elegans Hypothetical
           protein F11A5.5b protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 FQEPSILVEFEDHYIELVVHRYKYW 503
           F +PS+L  +ED Y+ L    Y+ W
Sbjct: 156 FDDPSLLDNYEDEYLHLTGTHYQSW 180


>Z92830-14|CAB07352.1|  363|Caenorhabditis elegans Hypothetical
           protein F11A5.5a protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 FQEPSILVEFEDHYIELVVHRYKYW 503
           F +PS+L  +ED Y+ L    Y+ W
Sbjct: 153 FDDPSLLDNYEDEYLHLTGTHYQSW 177


>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 141 CPSTHNNTANNNYEILSKWRVRGSRSTPRMTR 236
           CP+  ++TA N + I+  WR R  RS  ++ +
Sbjct: 24  CPTRGSSTAPNCFAIIGVWRRRKKRSVSKLIK 55


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 644 HNRDISXNX--STKXSHNIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           HN D   N   +   +H ++      T+H LNTS+  S   N+N ++N PI
Sbjct: 239 HNSDFERNRGGAPNRAHQLRHP---TTSHLLNTSVTSSIRANVNSNSNTPI 286


>AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform c protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 644 HNRDISXNX--STKXSHNIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           HN D   N   +   +H ++      T+H LNTS+  S   N+N ++N PI
Sbjct: 239 HNSDFERNRGGAPNRAHQLRHP---TTSHLLNTSVTSSIRANVNSNSNTPI 286


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 644 HNRDISXNX--STKXSHNIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           HN D   N   +   +H ++      T+H LNTS+  S   N+N ++N PI
Sbjct: 239 HNSDFERNRGGAPNRAHQLRHP---TTSHLLNTSVTSSIRANVNSNSNTPI 286


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 644 HNRDISXNX--STKXSHNIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           HN D   N   +   +H ++      T+H LNTS+  S   N+N ++N PI
Sbjct: 239 HNSDFERNRGGAPNRAHQLRHP---TTSHLLNTSVTSSIRANVNSNSNTPI 286


>AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative
           integrin-linked kinase protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 599 NIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           +I P  +RN N  +N  +N  PG   N    +PI
Sbjct: 410 HIPPGIARNMNRLMNICMNEDPGRRPNFDQIIPI 443


>AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arrest
           at two-fold protein4 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 599 NIKPSXSRNTNHNLNTSLNPSPGINLNLSTNLPI 498
           +I P  +RN N  +N  +N  PG   N    +PI
Sbjct: 427 HIPPGIARNMNRLMNICMNEDPGRRPNFDQIIPI 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,576
Number of Sequences: 27780
Number of extensions: 244660
Number of successful extensions: 576
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)