Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D16
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03680.1 68417.m00503 hypothetical protein                          34   0.14 
At5g37000.1 68418.m04436 exostosin family protein contains Pfam ...    29   3.0  
At3g50840.1 68416.m05567 phototropic-responsive NPH3 family prot...    29   3.0  

>At4g03680.1 68417.m00503 hypothetical protein 
          Length = 163

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 156 NNTANNNYEILSKWRVRGSRSTPRMTRRIAN 248
           N+ A NNY+I++K  +R   +  RMTR+I+N
Sbjct: 41  NDKATNNYDIVNKISIRRLSAVKRMTRKISN 71


>At5g37000.1 68418.m04436 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 547

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 414 SIASAFQEPSILVEFEDHYIELVVHRYKYW 503
           S+   FQ P  L +    Y++L+  +YK+W
Sbjct: 301 SLGLDFQTPKSLADHLKEYVDLIAGKYKFW 330


>At3g50840.1 68416.m05567 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 569

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 575 NTNHNLNTSLNPSPGINLNLSTNLPIFIPVYNKLNIVVFKLNKNTRLLKR 426
           N + N    L    G NL  +T   + IP Y+ LN  ++ ++   RLL+R
Sbjct: 295 NASENCRKFLEKKIGSNLEKATLDDLLIPSYSYLNETLYDIDLVERLLRR 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,279
Number of Sequences: 28952
Number of extensions: 224307
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)