Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D15
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)            31   0.81 
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  

>SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)
          Length = 220

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +2

Query: 431 KFPTLSASCSARACIRVGS---ERCKIAHS-----LGSSNDAKSSSLMIILDTRECTR*R 586
           K+P L+ +     C R G     +C +AHS     LGSSN  +SS  +I    REC + R
Sbjct: 39  KYPDLNENLIREICRRSGEIPWRKCVVAHSSRSRVLGSSNTKQSSEQVIGRGHRECRQPR 98


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 422 ESTKFPTLSASCSARACIRVGSERCKIAHSLGSSNDAKSS 541
           +S   P ++  C  RAC+ V S     A SLG  ND+ SS
Sbjct: 2   DSYFIPWVAVECFKRACLGVRSGAPHFADSLGRPNDSPSS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,804
Number of Sequences: 59808
Number of extensions: 323671
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)