Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D15
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...   119   2e-27
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...   101   7e-22
At5g16100.1 68418.m01881 hypothetical protein                          29   3.6  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    28   8.2  
At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas...    28   8.2  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
            subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
            identical to SP|O49160 Eukaryotic translation initiation
            factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
            {Arabidopsis thaliana}
          Length = 900

 Score =  119 bits (287), Expect = 2e-27
 Identities = 59/133 (44%), Positives = 87/133 (65%)
 Frame = -2

Query: 795  MPRGDXELPXYIVNEKMNAKVWDLMVGADNVRAMXGRXIREESLRTYLFTYAHVYASLSL 616
            + +GD +    ++N   + +VW L+   D++  M    I+EE+LRTYLFTY+  Y SLSL
Sbjct: 675  LTKGDFQKAFEVLN---SLEVWRLLKNRDSILDMVKDRIKEEALRTYLFTYSSSYESLSL 731

Query: 615  RSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLADKVG 436
              LA MF++   +VHS+VSKM+INEEL AS D P+ C + H  + +R+Q+LA QL +K+ 
Sbjct: 732  DQLAKMFDVSEPQVHSIVSKMMINEELHASWDQPTRCIVFHEVQHSRLQSLAFQLTEKLS 791

Query: 435  NLVDSNERIFEKQ 397
             L +SNER  E +
Sbjct: 792  ILAESNERAMESR 804


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score =  101 bits (241), Expect = 7e-22
 Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
 Frame = -2

Query: 735 VWDLMVGADNVRAMXGRXIREESLRTYLFTYAH-VYASLSLRSLADMFELPRQRVHSLVS 559
           +W L    D++  M    I E +LRTYLFTY+   Y SLSL  LA MF++    V+S+VS
Sbjct: 645 IWRLFKNRDSILDMVKASISEVALRTYLFTYSSSCYKSLSLAELAKMFDISESHVYSIVS 704

Query: 558 KMIINEELLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFEKQ 397
           KM+IN+EL A+ D P++C + H  +  R Q+LA Q+ +K+  L +SNE   E +
Sbjct: 705 KMMINKELNATWDQPTQCIVFHEVQHNRAQSLAFQITEKLATLAESNESAMESK 758


>At5g16100.1 68418.m01881 hypothetical protein 
          Length = 356

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 106 LFLESKKKLSGVDNADEFYTINFITTMFTVCLVFTETIN 222
           LF E    +S  D+ DEF T++F+   FT+ L   E  N
Sbjct: 73  LFHELDLSISNYDSKDEFETLSFVEDGFTIPLDMFEQPN 111


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -2

Query: 636 VYASLSLRSLADMFELPRQRVHSL--VSKMIINEELLASLD---DPSECAILHR 490
           VY  LS  SLAD    PR + HSL  VS++ +  +    LD   + SE  I+HR
Sbjct: 678 VYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHR 731


>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 378

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 419 MSVYSKNKARSSNGAAHSAGRGVSESGRVR 330
           M+ YSK +    NG    AG GVS  GR R
Sbjct: 97  MATYSKPQVSILNGIVMGAGAGVSIHGRFR 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,296
Number of Sequences: 28952
Number of extensions: 220959
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)