Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_D14
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    26   5.5  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.2  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   7.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   9.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   9.5  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 445 QISRLLNEDELTDSNIRLYLKNQTKKKFLNS 353
           ++ R+LNEDEL D+ + ++   Q     +N+
Sbjct: 106 ELQRMLNEDELRDALLLVFANKQDLPNAMNA 136


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 227 IIRLSRSMYTVFYFEYNFFSKYDALVWLV 141
           I++ +  MY VFY    F+  Y   VWL+
Sbjct: 305 IVQYTPHMYYVFYITSTFWIIYLLYVWLI 333


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 317 IYF*RIFIDLTPSM-IDVMKLFFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWL 144
           +YF ++  D  PS+ +  ++L FF + F      L +  + +   E  FF  Y+++VWL
Sbjct: 202 VYFEKVLKDTNPSLWVRNVQLSFF-SLFPCLFTILMKDYHNIA--ENGFFFGYNSIVWL 257


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 98  KLHTEILCYSTRQNAQAKLKHRIY*KNYIQNKIQYTSNDLD 220
           KLH+++  +S + NA ++L   +  +N +QN   ++S  +D
Sbjct: 326 KLHSKVDVHSKKLNALSQLNPILRSENVLQNDNHHSSLSMD 366


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 682 ASVHLNAINAGTSRGPGSDVQLRARPPGF---GAPR 584
           +S  +NA+N G S  P S V  +   P F   GAP+
Sbjct: 131 SSRQINALNVGQSSSPFSPVSEKVYDPSFTMSGAPQ 166


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 61  LLHKCDMLFYVLKTTYGNTMLQYKTKCTSQ 150
           L+  C +LF  +KTT+G     Y  K  +Q
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQ 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,225
Number of Sequences: 5004
Number of extensions: 55350
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)