Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_D14
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 72 5e-13
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 70 3e-12
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 66 4e-11
05_04_0255 + 19462668-19462695,19463443-19464491 62 4e-10
08_01_0142 - 1121762-1122822,1123087-1123114 62 5e-10
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 40 0.002
03_01_0169 + 1385813-1388359 34 0.15
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 30 2.5
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 5.7
04_04_0869 - 28883688-28884983 29 5.7
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 7.6
02_02_0635 - 12461466-12461789,12461867-12462076 28 7.6
09_02_0132 + 4704241-4704358,4704632-4704738 28 10.0
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 72.1 bits (169), Expect = 5e-13
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = -2
Query: 663 LSTLGPQEALVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAG 484
++ L ++ L+FS+GRALQ S L+AWGGKTEN++ Q+ I R KAN A +G Y
Sbjct: 281 MNKLSTKKPWALSFSFGRALQQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGD 340
Query: 483 SIPSLAASKSNFVKSHAY 430
++ AS+S VK + Y
Sbjct: 341 AVLGEGASESLHVKDYKY 358
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 700 GQSEEEASVHLNAINAGTSRGP 635
GQSEEEA+V+LNA+N +++ P
Sbjct: 268 GQSEEEATVNLNAMNKLSTKKP 289
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 69.7 bits (163), Expect = 3e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = -2
Query: 630 LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSN 451
LTFS+GRALQ S ++ WGGK EN+ A Q + R KAN A +GKY G+ A S+S
Sbjct: 484 LTFSFGRALQQSTIKKWGGKKENVAAAQAAFLARCKANSEATLGKY-GGAAGDAATSESL 542
Query: 450 FVKSHAY 430
+VK + Y
Sbjct: 543 YVKGYTY 549
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 65.7 bits (153), Expect = 4e-11
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 630 LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSN 451
++FSY RALQ + L+ WGG+ EN+ A Q L+ RAKAN LA +GKY + + A +
Sbjct: 323 VSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDG-EAAEAKEGM 381
Query: 450 FVKSHAY 430
FVK++ Y
Sbjct: 382 FVKNYVY 388
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = -2
Query: 663 LSTLGPQEALVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAG 484
++ L ++ L+FS+GRALQ S L+AW GK ENI + + R KAN A +G Y
Sbjct: 281 MNKLSTKKPWSLSFSFGRALQQSTLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGD 340
Query: 483 SIPSLAASKSNFVKSHAY 430
++ AS+S VK + Y
Sbjct: 341 AVLGEGASESLHVKDYKY 358
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -1
Query: 700 GQSEEEASVHLNAINAGTSRGPGS 629
GQSEEEA+++LNA+N +++ P S
Sbjct: 268 GQSEEEATLNLNAMNKLSTKKPWS 291
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = -2
Query: 630 LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGLAAVGKYVAGSIPSLAASKSN 451
LTFS+GRALQ S L+AW GK EN+ Q L+ R +AN A +G Y + S++
Sbjct: 296 LTFSFGRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAGEGVSENL 355
Query: 450 FVKSHAY 430
VK + Y
Sbjct: 356 HVKDYKY 362
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -1
Query: 700 GQSEEEASVHLNAINAGTSRG 638
GQSEEEA+ +LNA+N SRG
Sbjct: 270 GQSEEEATRNLNAMNQVASRG 290
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2
Query: 630 LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAK 523
++FSY RALQ + L+ WG + EN+ A Q EL A+
Sbjct: 374 VSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>03_01_0169 + 1385813-1388359
Length = 848
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 620 ATGAPSRLRCSAPGEGRPRTFSPDSRS*SSVLR-PTVSQQSANTLPALF 477
A GA S + S PG+ RTF PD+ SS R P V+ +NT+P L+
Sbjct: 27 ACGAASNV--SFPGDSPARTFVPDAPFLSSAGRVPAVTSTGSNTIPPLY 73
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 245 NTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 96
N F K ++ + +++ + YNFF + +V F YC ++ P +F
Sbjct: 322 NLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYC-LIIPATIF 370
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 292 SIKMR*KYIFTYLLLNSLTKLN 357
++K R +YIFTYLL N +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354
>04_04_0869 - 28883688-28884983
Length = 431
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 445 DKVRFRSGQRRNRAGNVFADCCETVGLSTLDQLLLSGENVLGLPSPGAEHRSLEGAPVAE 624
D V +G ++R + D TV + T+D +LL E G PSP P A
Sbjct: 290 DDVSMDTGMDKSRVASTVLDDTPTV-IHTVDSVLLPPELFGGAPSPAPAPGPASDVPAAS 348
Query: 625 RQNQG 639
+G
Sbjct: 349 PAPEG 353
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 194 FYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 99
FY Y+FF + +V F+LYC +V P+ V
Sbjct: 397 FYLLYSFFFVRKVVAHVVPFMLYC-VVIPFSV 427
>02_02_0635 - 12461466-12461789,12461867-12462076
Length = 177
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 545 CCPARMFSVFPPQARSTEAWRARP*LNVRTRAS*G 649
CC + +FP T AW +RP L+ R R S G
Sbjct: 34 CCLGDIIVLFPLGELRTMAWLSRPALSQRNRESFG 68
>09_02_0132 + 4704241-4704358,4704632-4704738
Length = 74
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 679 SVHLNAINAGTSRGPGSDVQLRARPPGFGAP 587
S H AG + G G+D AR PGFG P
Sbjct: 37 SNHKLVQGAGGADGTGNDAGQGARTPGFGLP 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,938
Number of Sequences: 37544
Number of extensions: 337792
Number of successful extensions: 914
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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